RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 FAM71E1Q6IPT2 247 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 ANKRD26P1Q6NSI1 321 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 IKBIPQ70UQ0 350 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 CIB1Q99828 191 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 CENPKQ9BS16 269 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 CHID1Q9BWS9 393 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 MS4A8Q9BY19 250 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 YY1AP1Q9H869 796 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 SLC2A4RGQ9NR83 387 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 SCOCQ9UIL1 159 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 SAP18O00422 153 aaKnown RBP25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 YY2O15391 372 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 TPST1O60507 370 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 KLHL18O94889 574 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 CPSF4O95639 269 aaKnown RBP25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 LYNP07948 512 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 RAP2AP10114 183 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 YPEL5P62699 121 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 TMEM154Q6P9G4 183 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 ABRAXAS1Q6UWZ7 409 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 ZNF621Q6ZSS3 439 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 CLECL1Q8IZS7 167 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 OR52E1Q8NGJ3 308 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 FAM162AQ96A26 154 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 SEPHS2Q99611 448 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 C9orf16Q9BUW7 83 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 KIR3DX1Q9H7L2 352 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 USP36Q9P275 1121 aaKnown RBP25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 COLEC10Q9Y6Z7 277 aa25.24■■□□□ 1.63
CCDC88C-205ENST00000553403 H7BY64 318 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 TOR1BO14657 336 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 LDLRP01130 860 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 KLK1P06870 262 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 HOXB6P17509 224 aaKnown RBP25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 ENGP17813 658 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 GPX2P18283 190 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 PPIBP23284 216 aaKnown RBP25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 CHRNB3Q05901 458 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 PDK3Q15120 406 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 KHDRBS2Q5VWX1 349 aaKnown RBP25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 GPR155Q7Z3F1 870 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 ANKRD53Q8N9V6 530 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 OR2A1Q8NGT9 310 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 RNF145Q96MT1 663 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 PRAP1Q96NZ9 151 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 SLC29A1Q99808 456 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 XKR8Q9H6D3 395 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 OLAHQ9NV23 265 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 SH3BP4Q9P0V3 963 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 ICKQ9UPZ9 632 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 WBP11Q9Y2W2 641 aaKnown RBP25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 HS3ST3A1Q9Y663 406 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 OR52A4PA6NMU1 304 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 CREG1O75629 220 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 FURINP09958 794 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 UBTFL6P0CB48 400 aaPredicted RBP25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 IL1RNP18510 177 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 NDUFS1P28331 727 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 CSNK1G2P78368 415 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 C2orf80Q0P641 193 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 TMTC4Q5T4D3 741 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 ERICH5Q6P6B1 374 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 PDXPQ96GD0 296 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 OSBPL11Q9BXB4 747 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 POLMQ9NP87 494 aaPredicted RBP25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 CA5BQ9Y2D0 317 aa25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 ZBTB32Q9Y2Y4 487 aaPredicted RBP25.23■■□□□ 1.63
CCDC88C-205ENST00000553403 C7orf72A4D263 438 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 SAC3D1A6NKF1 404 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 PRICKLE3O43900 615 aaPredicted RBP25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 SEMA4FO95754 770 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 TBX6O95947 436 aaPredicted RBP25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 IGLV3-19P01714 112 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 SRFP11831 508 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 CKMT2P17540 419 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 ABATP80404 500 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 SPRED1Q7Z699 444 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 C10orf111Q8N326 155 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 HMGB4Q8WW32 186 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 SPATA9Q9BWV2 254 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 DCAF13Q9NV06 445 aaKnown RBP25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 SCHIP1Q9P0W5 487 aaPredicted RBP25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 EBF1Q9UH73 591 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 PCOLCE2Q9UKZ9 415 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 CORO2BQ9UQ03 480 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 ERVK-11Q9UQG0 969 aa25.22■■□□□ 1.63
CCDC88C-205ENST00000553403 FAM149AA5PLN7 773 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 MAN2B1O00754 1011 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 TAS2R50P59544 299 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 NRF1Q16656 503 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 ZNF385BQ569K4 471 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 CPZQ66K79 652 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 FKBP9P1Q75LS8 142 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 PAGE2Q7Z2X7 111 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 EPHX4Q8IUS5 362 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 TTLQ8NG68 377 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 GOT1L1Q8NHS2 421 aaPredicted RBP25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 PPCDCQ96CD2 204 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 QRFPRQ96P65 431 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 BDH2Q9BUT1 245 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms