RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TMIGD1Q6UXZ0 262 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF621Q6ZSS3 439 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CCDC149Q6ZUS6 474 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 TMC8Q8IU68 726 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 STX19Q8N4C7 294 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 TMEM203Q969S6 136 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 REPS1Q96D71 796 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PPP3R2Q96LZ3 170 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 OPALINQ96PE5 141 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ASPNQ9BXN1 380 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 KCNH6Q9H252 994 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 LINC00597Q9H2U6 94 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 MIXL1Q9H2W2 232 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 REEP1Q9H902 201 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PDFQ9HBH1 243 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 NPAP1Q9NZP6 1156 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RHCGQ9UBD6 479 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 UBA2Q9UBT2 640 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SLC23A1Q9UHI7 598 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 TMPRSS11EQ9UL52 423 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SNX7Q9UNH6 387 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PRELID1Q9Y255 219 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ARIH1Q9Y4X5 557 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PCDHGA2Q9Y5H1 932 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 KIAA0100Q14667 2235 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 OTOFQ9HC10 1997 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 A0A0U1RQF3 1178 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 TBKBP1A7MCY6 615 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 IFRD1O00458 451 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 WNT9AO14904 365 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PCDH17O14917 1159 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RGS14O43566 566 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PCDH7O60245 1069 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PRAMEF11O60813 436 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SCN2BO60939 215 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CPSF4O95639 269 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CYP17A1P05093 508 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ITGA2P17301 1181 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ARHGDIAP52565 204 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ITGA1P56199 1179 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 WNT3P56703 355 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RAB25P57735 213 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RPS14P62263 151 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ABHD18Q0P651 414 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CRHR2Q13324 411 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 NFE2L1Q14494 772 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 LEXMQ3ZCV2 418 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 C5orf22Q49AR2 442 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PXDC1Q5TGL8 231 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 AFTPHQ6ULP2 937 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 FAM151BQ6UXP7 276 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF852Q6ZMS4 543 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PRR23CQ6ZRP0 262 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 TRIM46Q7Z4K8 759 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PEX5LQ8IYB4 626 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ADGRG2Q8IZP9 1017 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 KBTBD8Q8NFY9 601 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 GTPBP3Q969Y2 492 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CEP19Q96LK0 163 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 APOLD1Q96LR9 279 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PPP1R2P1Q96PQ5 205 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 IL4I1Q96RQ9 567 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RAD9AQ99638 391 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 TAPBPLQ9BX59 468 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 GABARAPL3Q9BY60 117 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ABCB9Q9NP78 766 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ASAH2Q9NR71 780 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 WWOXQ9NZC7 414 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 NDUFAF4Q9P032 175 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 MALT1Q9UDY8 824 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SAMD4AQ9UPU9 718 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PCDHB7Q9Y5E2 793 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CLCA3PQ9Y6N3 262 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 A3GALT2U3KPV4 340 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 A0A1W2PQ72 361 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CIB4A0PJX0 185 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 A8MUA0 341 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 EVPLLA8MZ36 301 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 LEUTXA8MZ59 168 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 ERN1O75460 977 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 UGT2B17O75795 530 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 C9P02748 559 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 ALPIP09923 528 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 HLA-EP13747 358 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 IL1RNP18510 177 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 OR1D2P34982 312 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 HNF4AP41235 474 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 KRT6CP48668 564 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SGSHP51688 502 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 POU6F2P78424 691 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PRKCZQ05513 592 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 C19orf57Q0VDD7 668 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 FAPQ12884 760 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PLD1Q13393 1074 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PPIGQ13427 754 aaKnown RBP eCLIP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 DMC1Q14565 340 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 UGT8Q16880 541 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 LRRC73Q5JTD7 316 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SAXO2Q658L1 398 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms