RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 MAGEB17A8MXT2 336 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 KIF1CO43896 1103 aaKnown RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 LCMT2O60294 686 aaKnown RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 DIAPH2O60879 1101 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 MYO1DO94832 1006 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 HOXB3P14651 431 aaPredicted RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 PVRP15151 417 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 LBPP18428 481 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 SERPINB3P29508 390 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 CSTF2P33240 577 aaKnown RBP eCLIP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 MRPL19P49406 292 aaKnown RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 IDH3AP50213 366 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 HTR6P50406 440 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 ERVK-8P63133 956 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 MEF2AQ02078 507 aaPredicted RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 NR6A1Q15406 480 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 NDUFA9Q16795 377 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 TLDC1Q6P9B6 456 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 Q6ZSR9 355 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 LARP4Q71RC2 724 aaKnown RBP eCLIP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 ABHD13Q7L211 337 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 VN1R4Q7Z5H5 301 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 SPATA19Q7Z5L4 167 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 ZFAND4Q86XD8 727 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 MCATQ8IVS2 390 aaKnown RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 N4BP2L2Q92802 583 aaPredicted RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 TUBGCP3Q96CW5 907 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 MVB12AQ96EY5 273 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 LIN37Q96GY3 246 aaPredicted RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 CCDC74BQ96LY2 380 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 KCNC2Q96PR1 638 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 DEPDC7Q96QD5 511 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 MTERF1Q99551 399 aaKnown RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 TBCDQ9BTW9 1192 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 TMEM120AQ9BXJ8 343 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 ACPTQ9BZG2 426 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 KCNK13Q9HB14 408 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 TOR4AQ9NXH8 423 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 RUVBL1Q9Y265 456 aaKnown RBP15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 A0A0J9YVX5 310 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 FEZF1A0PJY2 475 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 LRIT2A6NDA9 550 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 B4E171 279 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 H0YGG7 62 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 LSM1O15116 133 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 SLC22A2O15244 555 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 NDUFS4O43181 175 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 SCELO95171 688 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 ADSLP30566 484 aaPredicted RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 TSPAN7P41732 249 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 ARF3P61204 181 aaPredicted RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 RPS13P62277 151 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 EMX2Q04743 252 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 ACSM2AQ08AH3 577 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 DDX39BQ13838 428 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 FAM53BQ14153 422 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 IL11RAQ14626 422 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 GRM7Q14831 915 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 GSTA3Q16772 222 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 TCHHL1Q5QJ38 904 aaPredicted RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 ACSM2BQ68CK6 577 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 TRIM40Q6P9F5 258 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 MAVSQ7Z434 540 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 VN1R5Q7Z5H4 357 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 FAM20CQ8IXL6 584 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 GPR135Q8IZ08 494 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 METTL4Q8N3J2 472 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 CSNK1A1LQ8N752 337 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 OR2L5Q8NG80 312 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 C10orf82Q8WW14 230 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 RGMAQ96B86 450 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 FCRL1Q96LA6 429 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 PPM1MQ96MI6 270 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 PHOX2BQ99453 314 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 CMKLR1Q99788 373 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 ELAC2Q9BQ52 826 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 FAM107BQ9H098 131 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 SYNDIG1Q9H7V2 258 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 LRTM1Q9HBL6 345 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 SIDT1Q9NXL6 827 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 KLHL3Q9UH77 587 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 DCTN4Q9UJW0 460 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 SERTAD3Q9UJW9 196 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 CDV3Q9UKY7 258 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 ATXN7L1Q9ULK2 861 aaPredicted RBP15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 SLC12A4Q9UP95 1085 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 SRPK3Q9UPE1 567 aa15.28■□□□□ 0.04
PRPF40A-212ENST00000545856 CCDC22O60826 627 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 DCTN3O75935 186 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 HBQ1P09105 142 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 LINC00032P0C843 101 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 PRPS2P11908 318 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 ATP4BP51164 291 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 ARSFP54793 590 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 RAB15P59190 212 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 INSM1Q01101 510 aaPredicted RBP15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 GABPB1Q06547 395 aaPredicted RBP15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 CYP4F3Q08477 520 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 HERC3Q15034 1050 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 PRTGQ2VWP7 1150 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms