RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SLC38A4Q969I6 547 aa15.22■□□□□ 0.03
LDLR-204ENST00000545707 HEPHQ9BQS7 1158 aa15.22■□□□□ 0.03
LDLR-204ENST00000545707 RIOK2Q9BVS4 552 aaKnown RBP15.22■□□□□ 0.03
LDLR-204ENST00000545707 ITPAQ9BY32 194 aa15.22■□□□□ 0.03
LDLR-204ENST00000545707 C6orf62Q9GZU0 229 aaPredicted RBP15.22■□□□□ 0.03
LDLR-204ENST00000545707 FAM83DQ9H4H8 585 aa15.22■□□□□ 0.03
LDLR-204ENST00000545707 ADPRHL2Q9NX46 363 aa15.22■□□□□ 0.03
LDLR-204ENST00000545707 TAS2R16Q9NYV7 291 aa15.22■□□□□ 0.03
LDLR-204ENST00000545707 STOX2Q9P2F5 926 aaPredicted RBP15.22■□□□□ 0.03
LDLR-204ENST00000545707 PCDHGB3Q9Y5G1 929 aa15.22■□□□□ 0.03
LDLR-204ENST00000545707 MGAT4DA6NG13 374 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 FADS2P1A8MWK0 482 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 EIF3FO00303 357 aaPredicted RBP15.21■□□□□ 0.03
LDLR-204ENST00000545707 TEX28O15482 410 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 STSP08842 583 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 CD40LGP29965 261 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 TCEAL8Q8IYN2 117 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 OR7G3Q8NG95 312 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 OR5AK3PQ8NH89 298 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 RHOXF1Q8NHV9 184 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 SORCS1Q8WY21 1168 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 GGHQ92820 318 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 DOHHQ9BU89 302 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 HMX1Q9NP08 348 aaPredicted RBP15.21■□□□□ 0.03
LDLR-204ENST00000545707 ZNF229Q9UJW7 825 aa15.21■□□□□ 0.03
LDLR-204ENST00000545707 LEFTY2O00292 366 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 KDM1AO60341 852 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 PRMT3O60678 531 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 MYO1DO94832 1006 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 POP4O95707 220 aaKnown RBP15.21■□□□□ 0.02
LDLR-204ENST00000545707 TMED10P49755 219 aaKnown RBP15.21■□□□□ 0.02
LDLR-204ENST00000545707 HBA1P69905 142 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 SP140Q13342 867 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 PPIGQ13427 754 aaKnown RBP eCLIP15.21■□□□□ 0.023e-7■■□□□ 11.4
LDLR-204ENST00000545707 TIGD6Q17RP2 521 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 UBE2UQ5VVX9 321 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 NLGN4XQ8N0W4 816 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 OR9Q2Q8NGE9 314 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 IPCEF1Q8WWN9 437 aaPredicted RBP15.21■□□□□ 0.02
LDLR-204ENST00000545707 CLP1Q92989 425 aaKnown RBP15.21■□□□□ 0.02
LDLR-204ENST00000545707 CIDECQ96AQ7 238 aaPredicted RBP15.21■□□□□ 0.02
LDLR-204ENST00000545707 LMLNQ96KR4 655 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 EPYCQ99645 322 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 SCHIP1Q9P0W5 487 aaPredicted RBP15.21■□□□□ 0.02
LDLR-204ENST00000545707 HS3ST2Q9Y278 367 aa15.21■□□□□ 0.02
LDLR-204ENST00000545707 ZNF106Q9H2Y7 1883 aaKnown RBP15.2■□□□□ 0.02
LDLR-204ENST00000545707 SLC16A5O15375 505 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 TBX1O43435 398 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 URODP06132 367 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 MAGEA8P43361 318 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 OR10G2Q8NGC3 310 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 NEIL2Q969S2 332 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 OR51E2Q9H255 320 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 TRIM39Q9HCM9 518 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 GIN1Q9NXP7 522 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 PSORS1C1Q9UIG5 152 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 SH2B3Q9UQQ2 575 aa15.2■□□□□ 0.02
LDLR-204ENST00000545707 SERTM1A2A2V5 107 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 CLDN24A6NM45 220 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 NEDD8-MDP1E9PL57 170 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 HSMCR30P0CW71 290 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 IMPA1P29218 277 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 GRK3P35626 688 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 GGT2P36268 569 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 SELENOWP63302 87 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 SPIBQ01892 262 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 MEF2AQ02078 507 aaPredicted RBP15.19■□□□□ 0.02
LDLR-204ENST00000545707 EXOC3L2Q2M3D2 409 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 SYTL3Q4VX76 610 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 GDPD4Q6W3E5 623 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 TMPRSS11BQ86T26 416 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 C11orf65Q8NCR3 313 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 FAM83FQ8NEG4 500 aaPredicted RBP15.19■□□□□ 0.02
LDLR-204ENST00000545707 PKP4Q99569 1192 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 TCF25Q9BQ70 676 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 SLC46A2Q9BY10 475 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 GABARAPL3Q9BY60 117 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 KLHL25Q9H0H3 589 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 E9PQ18 207 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 SLCO2B1O94956 709 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 C6orf47O95873 294 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 DNTTP04053 509 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 GSTM1P09488 218 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 GTF2E2P29084 291 aaKnown RBP15.19■□□□□ 0.02
LDLR-204ENST00000545707 HNRNPFP52597 415 aaKnown RBP15.19■□□□□ 0.02
LDLR-204ENST00000545707 PPP5CP53041 499 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 MVDP53602 400 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 FADDQ13158 208 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 RAVER1Q8IY67 606 aaKnown RBP15.19■□□□□ 0.02
LDLR-204ENST00000545707 CPXM2Q8N436 756 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 CPA6Q8N4T0 437 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 DNAJC22Q8N4W6 341 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 RASGEF1AQ8N9B8 481 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 VPS37AQ8NEZ2 397 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 OR2A12Q8NGT7 310 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 NFKBIDQ8NI38 313 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 CHTF18Q8WVB6 975 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 GTPBP3Q969Y2 492 aaKnown RBP15.19■□□□□ 0.02
LDLR-204ENST00000545707 ROGDIQ9GZN7 287 aa15.19■□□□□ 0.02
LDLR-204ENST00000545707 ITM2CQ9NQX7 267 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms