RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 MAPK9P45984 424 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 MAP2K4P45985 399 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 TBPL1P62380 186 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CTF1Q16619 201 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 SMN1Q16637 294 aaKnown RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 CATSPEREQ5SY80 951 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 C1orf53Q5VUE5 145 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 KIAA1614Q5VZ46 1190 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 SLCO4C1Q6ZQN7 724 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 KIAA0907Q7Z7F0 614 aaPredicted RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 CFAP206Q8IYR0 622 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 NAGSQ8N159 534 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CPA6Q8N4T0 437 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 ZNF480Q8WV37 535 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 SAMD11Q96NU1 681 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CHST8Q9H2A9 424 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 RASSF1Q9NS23 344 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 RAPGEFL1Q9UHV5 662 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 NDRG4Q9ULP0 352 aaKnown RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 ZNF197O14709 1029 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 FAM20BO75063 409 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 FGF19O95750 216 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 GBAP04062 536 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CRATP43155 626 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CRYBA2P53672 197 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 EPHA5P54756 1037 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CASP9P55211 416 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CXCR4P61073 352 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 KCNJ10P78508 379 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 NTHL1P78549 312 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 PCDH1Q08174 1060 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 STARD3Q14849 445 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 NR1D2Q14995 579 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 PARS2Q7L3T8 475 aaKnown RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 CAMKMTQ7Z624 323 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 TSPYL5Q86VY4 417 aaPredicted RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 LMNTD1Q8N9Z9 388 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 OR4K1Q8NGD4 311 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 TRUB1Q8WWH5 349 aaKnown RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 COQ8BQ96D53 544 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 REPS1Q96D71 796 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 C7orf34Q96L11 122 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 RHNO1Q9BSD3 238 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 DUSP21Q9H596 190 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 SIRT5Q9NXA8 310 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 DKK3Q9UBP4 350 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 ZNF282Q9UDV7 671 aaPredicted RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 COQ6Q9Y2Z9 468 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 PCDHGA10Q9Y5H3 936 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CORINQ9Y5Q5 1042 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 CHD7Q9P2D1 2997 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 AXIN1O15169 862 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 CBFA2T3O75081 653 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 C1orf105O95561 183 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 TIMP1P01033 207 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 LINC00271P0C7V0 271 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 RRM2P31350 389 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 NPRL3Q12980 569 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 MAD2L1BPQ15013 274 aaPredicted RBP12.65□□□□□ -0.38
LDLR-203ENST00000535915 TMEM53Q6P2H8 277 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 C11orf65Q8NCR3 313 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 ABHD11Q8NFV4 315 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 SPPL2AQ8TCT8 520 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 LRIG1Q96JA1 1093 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 ZSWIM3Q96MP5 696 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 TCF20Q9UGU0 1960 aaKnown RBP12.65□□□□□ -0.38
LDLR-203ENST00000535915 ITGB1BP2Q9UKP3 347 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 PLXND1Q9Y4D7 1925 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 HTR3EA5X5Y0 456 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 SAP18O00422 153 aaKnown RBP12.65□□□□□ -0.38
LDLR-203ENST00000535915 RNASET2O00584 256 aaKnown RBP12.65□□□□□ -0.38
LDLR-203ENST00000535915 FADS2O95864 444 aaKnown RBP12.65□□□□□ -0.38
LDLR-203ENST00000535915 PCGF2P35227 344 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 CAMK2GQ13555 558 aaPredicted RBP12.65□□□□□ -0.38
LDLR-203ENST00000535915 DGCR6Q14129 220 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 TEAD4Q15561 434 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 ZNF385BQ569K4 471 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 FAHD1Q6P587 224 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 TRAPPC5Q8IUR0 188 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 UBE2FQ969M7 185 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 DOHHQ9BU89 302 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 GULP1Q9UBP9 304 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 SH2B3Q9UQQ2 575 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 DYRK1BQ9Y463 629 aa12.65□□□□□ -0.38
LDLR-203ENST00000535915 RGS10O43665 173 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 MT-ND2P03891 347 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 NPPBP16860 134 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 ZNF12P17014 697 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 PSMB9P28065 219 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 CD6P30203 668 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 RPP38P78345 283 aaKnown RBP12.64□□□□□ -0.39
LDLR-203ENST00000535915 ZNF763Q0D2J5 394 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 SLBPQ14493 270 aaKnown RBP eCLIP12.64□□□□□ -0.39
LDLR-203ENST00000535915 IQCCQ4KMZ1 466 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 NRSN1Q8IZ57 195 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 EPYCQ99645 322 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 REEP4Q9H6H4 257 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 PALMDQ9NP74 551 aa12.64□□□□□ -0.39
LDLR-203ENST00000535915 EXO1Q9UQ84 846 aaKnown RBP12.64□□□□□ -0.39
LDLR-203ENST00000535915 NINQ8N4C6 2090 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms