RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SLBPQ14493 270 aaKnown RBP eCLIP14.28□□□□□ -0.12
CPSF1-208ENST00000532560 APLFQ8IW19 511 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-208ENST00000532560 KRT78Q8N1N4 520 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 EXD3Q8N9H8 876 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 KCT2Q8NC54 265 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 TRPV3Q8NET8 790 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 TTLQ8NG68 377 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 NACC2Q96BF6 587 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 PTCD3Q96EY7 689 aaKnown RBP14.28□□□□□ -0.12
CPSF1-208ENST00000532560 MMABQ96EY8 250 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-208ENST00000532560 SEC16BQ96JE7 1060 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 MACROD1Q9BQ69 325 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 NT5DC2Q9H857 520 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 C14orf105Q9NVL8 296 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 XPR1Q9UBH6 696 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 OPTCQ9UBM4 332 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 TMCO1Q9UM00 188 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 K7EPI3 171 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 PRAMEF4O60810 478 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 H2AFYO75367 372 aaKnown RBP14.27□□□□□ -0.13
CPSF1-208ENST00000532560 SHBGP04278 402 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 ZGLP1P0C6A0 271 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 SFTPCP11686 197 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 MMP11P24347 488 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 OTX2P32243 289 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 FOXL2P58012 376 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 KCNAB2Q13303 367 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 ATP1A4Q13733 1029 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 E2F2Q14209 437 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 HERC3Q15034 1050 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 TBCCQ15814 346 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 PFKFB4Q16877 469 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 PRAMEF9Q5VWM5 478 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 METTL2BQ6P1Q9 378 aaKnown RBP14.27□□□□□ -0.13
CPSF1-208ENST00000532560 TMIGD1Q6UXZ0 262 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 PRSS41Q7RTY9 318 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 LCA5Q86VQ0 697 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 TDRPQ86YL5 185 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.27□□□□□ -0.13
CPSF1-208ENST00000532560 AFAP1L2Q8N4X5 818 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 MREGQ8N565 214 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 OR9A4Q8NGU2 314 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 ZCCHC10Q8TBK6 192 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 STT3BQ8TCJ2 826 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 ACMSDQ8TDX5 336 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 MOCOSQ96EN8 888 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 MRPL57Q9BQC6 102 aaKnown RBP14.27□□□□□ -0.13
CPSF1-208ENST00000532560 EFCAB11Q9BUY7 163 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 TGIF2Q9GZN2 237 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 SLC6A16Q9GZN6 736 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 SOX17Q9H6I2 414 aaPredicted RBP14.27□□□□□ -0.13
CPSF1-208ENST00000532560 ANKHQ9HCJ1 492 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 MKKSQ9NPJ1 570 aaPredicted RBP14.27□□□□□ -0.13
CPSF1-208ENST00000532560 ZNF358Q9NW07 568 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 CPSF2Q9P2I0 782 aaKnown RBP14.27□□□□□ -0.13
CPSF1-208ENST00000532560 TRPC4Q9UBN4 977 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 CCDC88CQ9P219 2028 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 PCSK5Q92824 1860 aa14.27□□□□□ -0.13
CPSF1-208ENST00000532560 SERPINA6P08185 405 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 EPB42P16452 691 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 IL1RNP18510 177 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 CD22P20273 847 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 HSD17B3P37058 310 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 CASP2P42575 452 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 RRADP55042 308 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 SKP1P63208 163 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 KLC1Q07866 573 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 LAPTM5Q13571 262 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 DOC2AQ14183 400 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 RASA2Q15283 850 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 RBBP5Q15291 538 aaKnown RBP14.26□□□□□ -0.13
CPSF1-208ENST00000532560 PCBP2Q15366 365 aaKnown RBP eCLIP14.26□□□□□ -0.13
CPSF1-208ENST00000532560 XKR6Q5GH73 641 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 CPZQ66K79 652 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 NIPAL1Q6NVV3 410 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 PPP1R32Q7Z5V6 425 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 TMEM151BQ8IW70 566 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 TMEM102Q8N9M5 508 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-208ENST00000532560 CREB3L4Q8TEY5 395 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 MZB1Q8WU39 189 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 MIEF2Q96C03 454 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 SCYL1Q96KG9 808 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 SEMA4CQ9C0C4 833 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 MRPL46Q9H2W6 279 aaKnown RBP14.26□□□□□ -0.13
CPSF1-208ENST00000532560 SEMA3GQ9NS98 782 aa14.26□□□□□ -0.13
CPSF1-208ENST00000532560 TNPO3Q9Y5L0 923 aaKnown RBP14.26□□□□□ -0.13
CPSF1-208ENST00000532560 NUP210LQ5VU65 1888 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 URADA6NGE7 173 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 ARGFXA6NJG6 315 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 EIF4E1BA6NMX2 242 aaKnown RBP14.25□□□□□ -0.13
CPSF1-208ENST00000532560 STX16-NPEPL1H3BU86 382 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 STX16O14662 325 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 WFS1O76024 890 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 KLHL18O94889 574 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 IGHEP01854 428 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 SERPIND1P05546 499 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 ALOX12P18054 663 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 PIK3CGP48736 1102 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 IRF8Q02556 426 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 HYAL2Q12891 473 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms