RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ASCC3Q8N3C0 2202 aaKnown RBP20.3■□□□□ 0.84
VPS28-212ENST00000530836 SEMA3DO95025 777 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 ANXA6P08133 673 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 SDC1P18827 310 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 CAPN3P20807 821 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 ASMTP46597 345 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 ZFP36L2P47974 494 aaKnown RBP20.3■□□□□ 0.84
VPS28-212ENST00000530836 PTGR1Q14914 329 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 DPY19L1Q2PZI1 675 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 TMEM26Q6ZUK4 368 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 ADCK2Q7Z695 626 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 ULK2Q8IYT8 1036 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 RNF175Q8N4F7 328 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 EID2Q8N6I1 236 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 OR4C6Q8NH72 309 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 HOPXQ9BPY8 73 aaPredicted RBP20.3■□□□□ 0.84
VPS28-212ENST00000530836 CENPKQ9BS16 269 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 DUSP23Q9BVJ7 150 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 DLGAP4Q9Y2H0 992 aa20.3■□□□□ 0.84
VPS28-212ENST00000530836 IGKV1-8A0A0C4DH67 115 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 C2orf74A8MZ97 194 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 BTN3A3O00478 584 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 TRIM38O00635 465 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 CBFA2T3O75081 653 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 CLEC3AO75596 197 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 RASSF9O75901 435 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 ETHE1O95571 254 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 ALPPL2P10696 532 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 PRPS1L1P21108 318 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 IL12AP29459 219 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 FASLGP48023 281 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 C21orf58P58505 322 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 YBX1P67809 324 aaKnown RBP20.29■□□□□ 0.84
VPS28-212ENST00000530836 DEFB133Q30KQ1 61 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 C6orf163Q5TEZ5 329 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 PRMT9Q6P2P2 845 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.29■□□□□ 0.846e-7■■■■■ 139.2
VPS28-212ENST00000530836 PATE1Q8WXA2 126 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 TESCQ96BS2 214 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 DPH7Q9BTV6 452 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.29■□□□□ 0.84
VPS28-212ENST00000530836 CLMPQ9H6B4 373 aa20.29■□□□□ 0.84
VPS28-212ENST00000530836 A0A088AWK7 358 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 B4DGG1 531 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 OR1F1O43749 312 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 CIB2O75838 187 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 TGFB1P01137 390 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 AHRP35869 848 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 FOXM1Q08050 763 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 ADNP2Q6IQ32 1131 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 ZNF425Q6IV72 752 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 KLHL35Q6PF15 583 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 BNC2Q6ZN30 1099 aaPredicted RBP20.28■□□□□ 0.84
VPS28-212ENST00000530836 METTL4Q8N3J2 472 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 C1orf52Q8N6N3 182 aaKnown RBP20.28■□□□□ 0.84
VPS28-212ENST00000530836 FAM13CQ8NE31 585 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 SLC6A20Q9NP91 592 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 DLL3Q9NYJ7 618 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 CROTQ9UKG9 612 aa20.28■□□□□ 0.84
VPS28-212ENST00000530836 OR6C74A6NCV1 312 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 CSRP1P21291 193 aaKnown RBP20.27■□□□□ 0.84
VPS28-212ENST00000530836 TIA1P31483 386 aaKnown RBP eCLIP20.27■□□□□ 0.84
VPS28-212ENST00000530836 SLC5A12Q1EHB4 618 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 WASHC2DQ5SRD0 308 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.27■□□□□ 0.84
VPS28-212ENST00000530836 DEPDC1Q5TB30 811 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 KHDRBS2Q5VWX1 349 aaKnown RBP20.27■□□□□ 0.84
VPS28-212ENST00000530836 PGM2L1Q6PCE3 622 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 VN1R5Q7Z5H4 357 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 ANKRD53Q8N9V6 530 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 TRPV3Q8NET8 790 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 DNAJB8Q8NHS0 232 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 BAHD1Q8TBE0 780 aaPredicted RBP20.27■□□□□ 0.84
VPS28-212ENST00000530836 JPH3Q8WXH2 748 aaPredicted RBP20.27■□□□□ 0.84
VPS28-212ENST00000530836 MS4A8Q9BY19 250 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 ACTR10Q9NZ32 417 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 BAIAP2L1Q9UHR4 511 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 KLK4Q9Y5K2 254 aa20.27■□□□□ 0.84
VPS28-212ENST00000530836 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.27■□□□□ 0.84
VPS28-212ENST00000530836 TP53BP1Q12888 1972 aaPredicted RBP20.27■□□□□ 0.84
VPS28-212ENST00000530836 ARHGEF17Q96PE2 2063 aaPredicted RBP20.27■□□□□ 0.84
VPS28-212ENST00000530836 TNFSF14O43557 240 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 SIGLEC6O43699 453 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 ANXA4P09525 319 aaPredicted RBP20.27■□□□□ 0.83
VPS28-212ENST00000530836 ARFIP1P53367 373 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 PSME3P61289 254 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 RELAQ04206 551 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 RIPK1Q13546 671 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 TLR1Q15399 786 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 TIGD2Q4W5G0 525 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 TMEM35AQ53FP2 167 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 KIAA1614Q5VZ46 1190 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 CYB5D1Q6P9G0 228 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 OGFOD3Q6PK18 319 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 MSANTD1Q6ZTZ1 278 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 PAGE2Q7Z2X7 111 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 OOSP2Q86WS3 158 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 FBXW8Q8N3Y1 598 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 DPP10Q8N608 796 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 FAM181AQ8N9Y4 354 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms