RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 DIAPH2O60879 1101 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 CDK2AP2O75956 126 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 VTNP04004 478 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 S100A6P06703 90 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 KRT13P13646 458 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 PFKFB1P16118 471 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 CD27P26842 260 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 SHC1P29353 583 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 PBLDP30039 288 aaPredicted RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 PTGER4P35408 488 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 RAD52P43351 418 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 HAAOP46952 286 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 LBX1P52954 281 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 BASP1P80723 227 aaKnown RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 NFATC2Q13469 925 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 IL11RAQ14626 422 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 MTF1Q14872 753 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 INAQ16352 499 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 EXT1Q16394 746 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 THOC7Q6I9Y2 204 aaKnown RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 PRR27Q6MZM9 219 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 ZNF343Q6P1L6 599 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 PAQR6Q6TCH4 344 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 FAM198BQ6UWH4 519 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 CENPQQ7L2Z9 268 aaPredicted RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 ADGRA1Q86SQ6 560 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 CATSPERDQ86XM0 798 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 LYG1Q8N1E2 194 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 LSMEM1Q8N8F7 131 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 ZNF540Q8NDQ6 660 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 GPRC5AQ8NFJ5 357 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 CCDC148Q8NFR7 591 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 OR8K1Q8NGG5 319 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 APOBEC4Q8WW27 367 aaKnown RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 CTNNBL1Q8WYA6 563 aaPredicted RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 NRBF2Q96F24 287 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 RBM41Q96IZ5 413 aaKnown RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 COG3Q96JB2 828 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 DGAT2Q96PD7 388 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 PARD6BQ9BYG5 372 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 GPR88Q9GZN0 384 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 UPF3AQ9H1J1 476 aaKnown RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 TLE6Q9H808 572 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 SPHK2Q9NRA0 654 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 ANKEF1Q9NU02 776 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 NSMCE4AQ9NXX6 385 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 HAO2Q9NYQ3 351 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 CHORDC1Q9UHD1 332 aaPredicted RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 DDX25Q9UHL0 483 aaKnown RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 RNF150Q9ULK6 438 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 SNX8Q9Y5X2 465 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 NPC1L1Q9UHC9 1359 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 STRCQ7RTU9 1775 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 PTPRGP23470 1445 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 TEX14Q8IWB6 1497 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 TRAV6A0A075B6T7 132 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 LOC105371267A0A1B0GV96 52 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 GOLGA6L19H0YKK7 550 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 TRIM77I1YAP6 450 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 NDUFAB1O14561 156 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 POLR3GO15318 223 aaPredicted RBP3.34□□□□□ -1.87
CD44-217ENST00000525348 ATP8B1O43520 1251 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 TRUB2O95900 331 aaKnown RBP3.34□□□□□ -1.87
CD44-217ENST00000525348 LINGO3P0C6S8 592 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 IDO1P14902 403 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 FERP16591 822 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 MUTP22033 750 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 LHCGRP22888 699 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 CSTF2P33240 577 aaKnown RBP eCLIP3.34□□□□□ -1.87
CD44-217ENST00000525348 GPC3P51654 580 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 PLTPP55058 493 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 KLHL30Q0D2K2 578 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 HSPB3Q12988 150 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 CALCOCO2Q13137 446 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 BECN1Q14457 450 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 ZNF239Q16600 458 aaKnown RBP3.34□□□□□ -1.87
CD44-217ENST00000525348 SLC35D3Q5M8T2 416 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 C6orf163Q5TEZ5 329 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 NAA16Q6N069 864 aaPredicted RBP3.34□□□□□ -1.87
CD44-217ENST00000525348 MFSD12Q6NUT3 480 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 SUSD1Q6UWL2 747 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 RUFY3Q7L099 469 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 NLRP14Q86W24 1093 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 SYT2Q8N9I0 419 aaPredicted RBP3.34□□□□□ -1.87
CD44-217ENST00000525348 OR10Q1Q8NGQ4 319 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 GOT1L1Q8NHS2 421 aaPredicted RBP3.34□□□□□ -1.87
CD44-217ENST00000525348 KIF18AQ8NI77 898 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 AFAP1L1Q8TED9 768 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 GTF3AQ92664 365 aaKnown RBP3.34□□□□□ -1.87
CD44-217ENST00000525348 CCDC114Q96M63 670 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 LRRC61Q9BV99 259 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 Q9H8V8 135 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 ANKZF1Q9H8Y5 726 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 PARVGQ9HBI0 331 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 FKBP14Q9NWM8 211 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 NUDT4Q9NZJ9 180 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 WDR35Q9P2L0 1181 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 THEGQ9P2T0 379 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 RPS6KA6Q9UK32 745 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 NUDCQ9Y266 331 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms