RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ZER1Q7Z7L7 766 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 DZIP1Q86YF9 867 aaKnown RBP3.62□□□□□ -1.83
CD44-215ENST00000525241 Q8NBF4 154 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.62□□□□□ -1.83
CD44-215ENST00000525241 GRK7Q8WTQ7 553 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 DNASE1L2Q92874 299 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 OMA1Q96E52 524 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 BSCL2Q96G97 398 aaPredicted RBP3.62□□□□□ -1.83
CD44-215ENST00000525241 UBQLN3Q9H347 655 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 SLC12A6Q9UHW9 1150 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 LNPEPQ9UIQ6 1025 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 POMT2Q9UKY4 750 aa3.62□□□□□ -1.83
CD44-215ENST00000525241 E5RGE8 158 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 SLC30A4O14863 429 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 KIF5CO60282 957 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 CASTP20810 708 aaKnown RBP3.61□□□□□ -1.83
CD44-215ENST00000525241 TLX1P31314 330 aaPredicted RBP3.61□□□□□ -1.83
CD44-215ENST00000525241 OR3A1P47881 315 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 KRTAP10-12P60413 245 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 SCN1BQ07699 218 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 ELAVL2Q12926 359 aaKnown RBP3.61□□□□□ -1.83
CD44-215ENST00000525241 GLIPR1L2Q4G1C9 344 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 FAM106AQ4KMX7 169 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 ZNF542PQ5EBM4 170 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 ZRANB3Q5FWF4 1079 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 ZNF770Q6IQ21 691 aaPredicted RBP3.61□□□□□ -1.83
CD44-215ENST00000525241 KLHL10Q6JEL2 608 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 COX8CQ7Z4L0 72 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 GALNTL5Q7Z4T8 443 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 PHLDB2Q86SQ0 1253 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 GTSCR1Q86UQ5 136 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 CREBRFQ8IUR6 639 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 CROCCP3Q8IVE0 287 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 SIX6OS1Q8N1H7 587 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 CASP10Q92851 521 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 MR1Q95460 341 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 ATXN7L3BQ96GX2 97 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 TSSK2Q96PF2 358 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 CITED2Q99967 270 aaPredicted RBP3.61□□□□□ -1.83
CD44-215ENST00000525241 THUMPD3Q9BV44 507 aaKnown RBP3.61□□□□□ -1.83
CD44-215ENST00000525241 LRRC61Q9BV99 259 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 C5orf66Q9H5L9 145 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 EXOC1Q9NV70 894 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 NSG2Q9Y328 171 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 COLEC10Q9Y6Z7 277 aa3.61□□□□□ -1.83
CD44-215ENST00000525241 IGHV3OR16-10A0A075B7F0 116 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 A0A0B4J203 849 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 K7EQD1 137 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 IFIT3O14879 490 aaKnown RBP3.6□□□□□ -1.83
CD44-215ENST00000525241 MAGEB2O15479 319 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 MT-ND2P03891 347 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 SP9P0CG40 484 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 GLULP15104 373 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 DHODHQ02127 395 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 BFSP1Q12934 665 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 ENPP2Q13822 863 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 ALDH1L2Q3SY69 923 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 ZNF343Q6P1L6 599 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 GDPGP1Q6ZNW5 385 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 ZFAND4Q86XD8 727 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 MEX3DQ86XN8 651 aaKnown RBP3.6□□□□□ -1.83
CD44-215ENST00000525241 ZC3H3Q8IXZ2 948 aaKnown RBP3.6□□□□□ -1.83
CD44-215ENST00000525241 C4orf19Q8IY42 314 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 SLC22A15Q8IZD6 547 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 METTL4Q8N3J2 472 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 CHURC1Q8WUH1 139 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 SGF29Q96ES7 293 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 WBP1Q96G27 269 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 SPATA17Q96L03 361 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 POLKQ9UBT6 870 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 NOCTQ9UK39 431 aaKnown RBP3.6□□□□□ -1.83
CD44-215ENST00000525241 ITGA11Q9UKX5 1188 aa3.6□□□□□ -1.83
CD44-215ENST00000525241 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.59□□□□□ -1.83
CD44-215ENST00000525241 hCG_38984A0A1B0GV85 526 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 NKX6-3A6NJ46 265 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 YDJCA8MPS7 323 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 RNF103O00237 685 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 ST8SIA3O43173 380 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 MLNRO43193 412 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 PI15O43692 258 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 NXPH4O95158 308 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 RLN1P04808 185 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 EEF2P13639 858 aaKnown RBP3.59□□□□□ -1.83
CD44-215ENST00000525241 SELEP16581 610 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 SP100P23497 879 aaPredicted RBP3.59□□□□□ -1.83
CD44-215ENST00000525241 FOLH1Q04609 750 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 ZNF177Q13360 481 aaPredicted RBP3.59□□□□□ -1.83
CD44-215ENST00000525241 SCARB2Q14108 478 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 PAQR6Q6TCH4 344 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 LCLAT1Q6UWP7 414 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 C3P1Q6ZMU1 363 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 TEX26Q8N6G2 289 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 UXS1Q8NBZ7 420 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 OR10G7Q8NGN6 311 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 ATP8B4Q8TF62 1192 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 LURAP1Q96LR2 239 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 LGMNQ99538 433 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 IL12RB2Q99665 862 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 PARLQ9H300 379 aa3.59□□□□□ -1.83
CD44-215ENST00000525241 RPF1Q9H9Y2 349 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms