RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 VN1R3Q9BXE9 311 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 EHD1Q9H4M9 534 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SUV39H2Q9H5I1 410 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF334Q9HCZ1 680 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 EXOSC4Q9NPD3 245 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 C14orf119Q9NWQ9 140 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 RUVBL1Q9Y265 456 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 MICAL3Q7RTP6 2002 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SSX4O60224 188 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 NUAK1O60285 661 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 CYP7B1O75881 506 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 RPLP0P05388 317 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 CDK1P06493 297 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 MC1RQ01726 317 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 VEZF1Q14119 521 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 GANABQ14697 944 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 EXOC3L2Q2M3D2 409 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 SPOUT1Q5T280 376 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 C6orf183Q5T699 404 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 AKAP14Q86UN6 197 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 METTL4Q8N3J2 472 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 OR8J2Q8NGG1 315 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 OR4A15Q8NGL6 344 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 SAMD11Q96NU1 681 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 HHIPQ96QV1 700 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 AGAP14A8MT82 685 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 PCDH17O14917 1159 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 SOCS5O75159 536 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 ADORA3P0DMS8 318 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 ATP1B2P14415 290 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 HNMTP50135 292 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 TUBA1BP68363 451 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 POM121L1PQ3SYA9 428 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 DPY19L3Q6ZPD9 716 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 Q6ZVL8 140 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 TUBA1AQ71U36 451 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 NPAS4Q8IUM7 802 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 NPAS3Q8IXF0 933 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 TCAIMQ8N3R3 496 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 CELF2-AS1Q8N7Q2 184 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 CCM2Q9BSQ5 444 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 TSEN34Q9BSV6 310 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 SMG9Q9H0W8 520 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 TRIM39Q9HCM9 518 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 MS4A12Q9NXJ0 267 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF226Q9NYT6 803 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 MYCP01106 439 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 CA8P35219 290 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 PRIM2P49643 509 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 C10orf62Q5T681 223 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 USP45Q70EL2 814 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 USP43Q70EL4 1123 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 CHST14Q8NCH0 376 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 OVCA2Q8WZ82 227 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 CPNE5Q9HCH3 593 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 ABCB8Q9NUT2 735 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 CFAP97Q9P2B7 532 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 MAP4K5Q9Y4K4 846 aa8.91□□□□□ -0.98
LIMCH1-215ENST00000512632 PRAMEF25A6NGN4 478 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 A6NL46 340 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 ARHGEF33A8MVX0 844 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 SRCP12931 536 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 SELPP16109 830 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 RGS6P49758 472 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 SELENOWP63302 87 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 TBCEQ15813 527 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 AGTRAPQ6RW13 159 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 GDPD3Q7L5L3 318 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 OTOP2Q7RTS6 562 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 CACTIN-AS1Q8N1I8 211 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 FCGR1BQ92637 280 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 NUAK2Q9H093 628 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 GPATCH2Q9NW75 528 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 ERVK13-1Q9NX77 482 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 RAB23Q9ULC3 237 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 PLXNA4Q9HCM2 1894 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 NINQ8N4C6 2090 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 FAM227AF5H4B4 570 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 GFYI3L273 518 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 SCAMP2O15127 329 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 ASNA1O43681 348 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 GREM1O60565 184 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 C1SP09871 688 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 IDSP22304 550 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 PRPH2P23942 346 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 CST5P28325 142 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 PBLDP30039 288 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 RPS13P62277 151 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 HBA1P69905 142 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF385BQ569K4 471 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 SLC44A2Q8IWA5 706 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 PGBD3Q8N328 593 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 NFKBIDQ8NI38 313 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 OR4K3Q96R72 315 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 IL4I1Q96RQ9 567 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 EPYCQ99645 322 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 IFT52Q9Y366 437 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 RGS5O15539 181 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 MED26O95402 600 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms