RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 SMIM24O75264 130 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 STATHP02808 62 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 PRB1P04280 392 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 ZGLP1P0C6A0 271 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 PYGBP11216 843 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 SCTRP47872 440 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 KCNC1P48547 511 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 CCT5P48643 541 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 CCL11P51671 97 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 ALDH18A1P54886 795 aaKnown RBP15.55■□□□□ 0.08
SF3A1-209ENST00000496189 NFATC3Q12968 1075 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 LACTB2Q53H82 288 aaPredicted RBP15.55■□□□□ 0.08
SF3A1-209ENST00000496189 XKR6Q5GH73 641 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 TECRLQ5HYJ1 363 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 MFSD4BQ5TF39 518 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 IRAK1BP1Q5VVH5 260 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 ATG9BQ674R7 924 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 TMEM214Q6NUQ4 689 aaKnown RBP15.55■□□□□ 0.08
SF3A1-209ENST00000496189 TMIGD1Q6UXZ0 262 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 COX15Q7KZN9 410 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 PLD6Q8N2A8 252 aaKnown RBP15.55■□□□□ 0.08
SF3A1-209ENST00000496189 CCT6BQ92526 530 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 TM4SF19Q96DZ7 209 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 PTCD3Q96EY7 689 aaKnown RBP15.55■□□□□ 0.08
SF3A1-209ENST00000496189 SEC16BQ96JE7 1060 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 TMEM79Q9BSE2 394 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 TMEM109Q9BVC6 243 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 EHD1Q9H4M9 534 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 P4HTMQ9NXG6 502 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 CPSF2Q9P2I0 782 aaKnown RBP15.55■□□□□ 0.08
SF3A1-209ENST00000496189 TNPO3Q9Y5L0 923 aaKnown RBP15.55■□□□□ 0.08
SF3A1-209ENST00000496189 SLC22A7Q9Y694 548 aa15.55■□□□□ 0.08
SF3A1-209ENST00000496189 MDC1Q14676 2089 aaKnown RBP15.55■□□□□ 0.08
SF3A1-209ENST00000496189 LOC400499M0QZD8 3231 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 A0A088AWK7 358 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 ANKDD1BA6NHY2 528 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 GOLGA8RI6L899 631 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 AGPSO00116 658 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 HEXBP07686 556 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 EPB42P16452 691 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 IL1RNP18510 177 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 TAC1P20366 129 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 ZNF10P21506 573 aaPredicted RBP15.54■□□□□ 0.08
SF3A1-209ENST00000496189 PIK3CGP48736 1102 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 STXBP1P61764 594 aaKnown RBP15.54■□□□□ 0.08
SF3A1-209ENST00000496189 IRF8Q02556 426 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 KLC1Q07866 573 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 SLBPQ14493 270 aaKnown RBP eCLIP15.54■□□□□ 0.08
SF3A1-209ENST00000496189 PFKFB4Q16877 469 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 C18orf21Q32NC0 220 aaPredicted RBP15.54■□□□□ 0.08
SF3A1-209ENST00000496189 SHISA6Q6ZSJ9 500 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 PRSS58Q8IYP2 241 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 KCT2Q8NC54 265 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 OR9A4Q8NGU2 314 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 NT5CQ8TCD5 201 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 MZB1Q8WU39 189 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 UBE2E3Q969T4 207 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 ABHD17AQ96GS6 310 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 FAR2Q96K12 515 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 SPSB2Q99619 263 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 MACROD1Q9BQ69 325 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 SLC25A23Q9BV35 468 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 XPR1Q9UBH6 696 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 LGALS13Q9UHV8 139 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 C3orf18Q9UK00 162 aa15.54■□□□□ 0.08
SF3A1-209ENST00000496189 SEC16AO15027 2179 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 CACNA1GO43497 2377 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 IGLV3-12A0A075B6K2 115 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 VSTM2BA6NLU5 285 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 K7EPI3 171 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 TAPBPO15533 448 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 FOXS1O43638 330 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 CNOT3O75175 753 aaKnown RBP15.53■□□□□ 0.08
SF3A1-209ENST00000496189 GLRA3O75311 464 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 MED26O95402 600 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 UMODP07911 640 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 ALOX12P18054 663 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 VARSP26640 1264 aaKnown RBP15.53■□□□□ 0.08
SF3A1-209ENST00000496189 PGDP52209 483 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 EMP2P54851 167 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 CHAF1BQ13112 559 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 KRT71Q3SY84 523 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 TUBB8Q3ZCM7 444 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 FBXO48Q5FWF7 155 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 CPZQ66K79 652 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 TCTN3Q6NUS6 607 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 METTL2BQ6P1Q9 378 aaKnown RBP15.53■□□□□ 0.08
SF3A1-209ENST00000496189 SLCO4C1Q6ZQN7 724 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 DTWD1Q8N5C7 304 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 ZNF740Q8NDX6 193 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 UBTD2Q8WUN7 234 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 METTL21AQ8WXB1 218 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 ESAMQ96AP7 390 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 SEMA4CQ9C0C4 833 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 TGIF2Q9GZN2 237 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 NT5DC2Q9H857 520 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 SYNPO2LQ9H987 977 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 ATP13A2Q9NQ11 1180 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 ZNF358Q9NW07 568 aa15.53■□□□□ 0.08
SF3A1-209ENST00000496189 ARGLU1Q9NWB6 273 aaPredicted RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms