RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 CRYBA2P53672 197 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 CTAG1AP78358 180 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 KCNJ10P78508 379 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 ZXDBP98169 803 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 CPSF6Q16630 551 aaKnown RBP eCLIP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 TTLL9Q3SXZ7 439 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 PLAG1Q6DJT9 500 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SERPINA11Q86U17 422 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SLC34A3Q8N130 599 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 BTN2A2Q8WVV5 523 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 GTPBP3Q969Y2 492 aaKnown RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 MTERF3Q96E29 417 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 METTL2AQ96IZ6 378 aaKnown RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 MAGEB10Q96LZ2 347 aaPredicted RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 PANX1Q96RD7 426 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 IL4I1Q96RQ9 567 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 KCNN2Q9H2S1 579 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 BPIFA1Q9NP55 256 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SCML1Q9UN30 329 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 MAN2B2Q9Y2E5 1009 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 LOC730098B7Z3J9 87 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 ZNF670-ZNF695F2Z2N8 137 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SLC9A3R1O14745 358 aaPredicted RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 TAPBPO15533 448 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SEC14L5O43304 696 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 PRLP01236 227 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 FGF1P05230 155 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SRCP12931 536 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 ARSBP15848 533 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 HOXD10P28358 340 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 RGS1Q08116 209 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 GALEQ14376 348 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 LIPKQ5VXJ0 399 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 KIAA1324Q6UXG2 1013 aaKnown RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 FAM181AQ8N9Y4 354 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SLC37A3Q8NCC5 494 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 C19orf18Q8NEA5 215 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 C9orf43Q8TAL5 461 aaPredicted RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 POP5Q969H6 163 aaKnown RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SMARCD1Q96GM5 515 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 HYLS1Q96M11 299 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 ZIC5Q96T25 663 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 APOL5Q9BWW9 433 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 ELF5Q9UKW6 265 aaPredicted RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 PDCD11Q14690 1871 aaKnown RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 IQCMA0A1B0GVH7 501 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 H3BRB1 525 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SLC28A1O00337 649 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 OPN1SWP03999 348 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SLC2A2P11168 524 aaPredicted RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 POU1F1P28069 291 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 CDH12P55289 794 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 CAV3P56539 151 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 UBE3AQ05086 875 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 ARHGAP1Q07960 439 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 TTLL4Q14679 1199 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 PTGES3Q15185 160 aaKnown RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 CCNJQ5T5M9 372 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 ANKRD54Q6NXT1 300 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SBSNQ6UWP8 590 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 CIR1Q86X95 450 aaPredicted RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 PHC2Q8IXK0 858 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 PHF21AQ96BD5 680 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 ULK4Q96C45 1275 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 RBFOX1Q9NWB1 397 aaKnown RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 NUDT4Q9NZJ9 180 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 PLEKHB1Q9UF11 243 aaPredicted RBP11.28□□□□□ -0.6
HDAC4-210ENST00000493582 LOC285556D6RIA3 1793 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 LRRTM2O43300 516 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 CPSF4O95639 269 aaKnown RBP11.27□□□□□ -0.6
HDAC4-210ENST00000493582 TP53P04637 393 aaPredicted RBP11.27□□□□□ -0.6
HDAC4-210ENST00000493582 MSL3P1P0C860 447 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 HLA-DPA1P20036 260 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 TALDO1P37837 337 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 CLDN8P56748 225 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 ZMYND11Q15326 602 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 P2RY14Q15391 338 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 SPHARQ15513 63 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 CCDC85BQ15834 202 aaPredicted RBP11.27□□□□□ -0.6
HDAC4-210ENST00000493582 PAQR6Q6TCH4 344 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 PTCHD4Q6ZW05 846 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 COMMD7Q86VX2 200 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 Q8N402 240 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 MDGA1Q8NFP4 955 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 OR9Q1Q8NGQ5 310 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 HASPINQ8TF76 798 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 MYLPFQ96A32 169 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 SLC25A46Q96AG3 418 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 TADA1Q96BN2 335 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 EGFL8Q99944 293 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 C2orf49Q9BVC5 232 aaPredicted RBP11.27□□□□□ -0.6
HDAC4-210ENST00000493582 ACPTQ9BZG2 426 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 TMEM245Q9H330 911 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 PAK6Q9NQU5 681 aaPredicted RBP11.27□□□□□ -0.6
HDAC4-210ENST00000493582 NLE1Q9NVX2 485 aaPredicted RBP11.27□□□□□ -0.6
HDAC4-210ENST00000493582 MAPRE3Q9UPY8 281 aa11.27□□□□□ -0.6
HDAC4-210ENST00000493582 PCDH17O14917 1159 aa11.27□□□□□ -0.61
HDAC4-210ENST00000493582 RFPL3O75679 317 aa11.27□□□□□ -0.61
HDAC4-210ENST00000493582 AFF1P51825 1210 aaKnown RBP11.27□□□□□ -0.61
HDAC4-210ENST00000493582 CASP9P55211 416 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms