RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CCSMST1Q4G0I0 132 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 GKAP1Q5VSY0 366 aaPredicted RBP16.28■□□□□ 0.2
VIM-205ENST00000485947 ATG14Q6ZNE5 492 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 SPATA21Q7Z572 469 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 GOLGA7Q7Z5G4 137 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 PIGWQ7Z7B1 504 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 CUZD1Q86UP6 607 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 SLC38A9Q8NBW4 561 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 OR56A3Q8NH54 315 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 C9orf43Q8TAL5 461 aaPredicted RBP16.28■□□□□ 0.2
VIM-205ENST00000485947 PROKR1Q8TCW9 393 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 ZUFSPQ96AP4 578 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 FAR2Q96K12 515 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 ZNF382Q96SR6 550 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 ELAC2Q9BQ52 826 aaKnown RBP16.28■□□□□ 0.2
VIM-205ENST00000485947 SLC7A5P2Q9GIP4 190 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 ZNF395Q9H8N7 513 aaPredicted RBP16.28■□□□□ 0.2
VIM-205ENST00000485947 SPHK1Q9NYA1 384 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 PLCL2Q9UPR0 1127 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 ANGPTL3Q9Y5C1 460 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 KLK4Q9Y5K2 254 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 MRPS18BQ9Y676 258 aaKnown RBP16.28■□□□□ 0.2
VIM-205ENST00000485947 MKRN2OSH3BPM6 223 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 SUV39H1O43463 412 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 OR2B3O76000 313 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 SLC16A8O95907 504 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 OTCP00480 354 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 PVRP15151 417 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 EPB42P16452 691 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 CCND1P24385 295 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 GABRA4P48169 554 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 RPL14P50914 215 aaKnown RBP16.27■□□□□ 0.2
VIM-205ENST00000485947 CDH13P55290 713 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 GRB7Q14451 532 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 C18orf21Q32NC0 220 aaPredicted RBP16.27■□□□□ 0.2
VIM-205ENST00000485947 PTCHD3Q3KNS1 767 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 FBXO48Q5FWF7 155 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 ZC3H12BQ5HYM0 836 aaKnown RBP16.27■□□□□ 0.2
VIM-205ENST00000485947 YOD1Q5VVQ6 348 aaPredicted RBP16.27■□□□□ 0.2
VIM-205ENST00000485947 RHBDD2Q6NTF9 364 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 TCTN3Q6NUS6 607 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 RPS27LQ71UM5 84 aaKnown RBP16.27■□□□□ 0.2
VIM-205ENST00000485947 DNAJC22Q8N4W6 341 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 TEX9Q8N6V9 391 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 ZNF781Q8N8C0 355 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 TRPC4APQ8TEL6 797 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 AGAP11Q8TF27 550 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 ZNF480Q8WV37 535 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 ESAMQ96AP7 390 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 MOCOSQ96EN8 888 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 NSUN5Q96P11 429 aaKnown RBP16.27■□□□□ 0.2
VIM-205ENST00000485947 CHST8Q9H2A9 424 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 ZBTB26Q9HCK0 441 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 SEMA4BQ9NPR2 832 aaPredicted RBP16.27■□□□□ 0.2
VIM-205ENST00000485947 DNAJC11Q9NVH1 559 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.27■□□□□ 0.2
VIM-205ENST00000485947 VTI1BQ9UEU0 232 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 ANAPC2Q9UJX6 822 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 PADI2Q9Y2J8 665 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 ASB1Q9Y576 335 aa16.27■□□□□ 0.2
VIM-205ENST00000485947 CDC14CA4D256 554 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 C9J4A7 227 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 H3BMH7 237 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 ZNF749O43361 778 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 SLC28A2O43868 658 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 WDR47O94967 919 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 ESRRBO95718 433 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 FGF4P08620 206 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 ALOX15P16050 662 aaPredicted RBP16.26■□□□□ 0.19
VIM-205ENST00000485947 PNLIPRP1P54315 467 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 RBBP7Q16576 425 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 CAPN13Q6MZZ7 669 aaPredicted RBP16.26■□□□□ 0.19
VIM-205ENST00000485947 FAM199XQ6PEV8 388 aaPredicted RBP16.26■□□□□ 0.19
VIM-205ENST00000485947 SYTL1Q8IYJ3 562 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 LINC01555Q8NAE3 123 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 STON2Q8WXE9 905 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 MAGEB10Q96LZ2 347 aaPredicted RBP16.26■□□□□ 0.19
VIM-205ENST00000485947 IP6K3Q96PC2 410 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 NTMT1Q9BV86 223 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 RABEP2Q9H5N1 569 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 IPPKQ9H8X2 491 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 FAM60AQ9NP50 221 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 NPHS2Q9NP85 383 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 MID1IP1Q9NPA3 183 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 ACSS2Q9NR19 701 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 GPRC5BQ9NZH0 403 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 ZDHHC2Q9UIJ5 367 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 MAN2B2Q9Y2E5 1009 aa16.26■□□□□ 0.19
VIM-205ENST00000485947 USP9XQ93008 2570 aaPredicted RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 UBFD1O14562 309 aaKnown RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 ZSCAN9O15535 394 aaPredicted RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 PRICKLE3O43900 615 aaPredicted RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 GDF5P43026 501 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 ARSFP54793 590 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 KCNC4Q03721 635 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 SRSF1Q07955 248 aaKnown RBP eCLIP16.25■□□□□ 0.19
VIM-205ENST00000485947 CDC16Q13042 620 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 NAE1Q13564 534 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 ZIC1Q15915 447 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 CYP2A13Q16696 494 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms