RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 YEATS4O95619 227 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 CSTF2P33240 577 aaKnown RBP eCLIP5.18□□□□□ -1.58
USP40-213ENST00000483216 CCR10P46092 362 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 CCZ1BP86790 482 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 CCZ1P86791 482 aaPredicted RBP5.18□□□□□ -1.58
USP40-213ENST00000483216 AKAP17AQ02040 695 aaKnown RBP5.18□□□□□ -1.58
USP40-213ENST00000483216 KLC1Q07866 573 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 RALGDSQ12967 914 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 CUL3Q13618 768 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 HNRNPDQ14103 355 aaKnown RBP5.18□□□□□ -1.58
USP40-213ENST00000483216 SQLEQ14534 574 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 TNIP1Q15025 636 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 MCMDC2Q4G0Z9 681 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 SLC25A53Q5H9E4 307 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 SLC35D3Q5M8T2 416 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 AP1ARQ63HQ0 302 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 DET1Q7L5Y6 550 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 LACC1Q8IV20 430 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 DCLK2Q8N568 766 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 BMPERQ8N8U9 685 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 TDRD5Q8NAT2 981 aaKnown RBP5.18□□□□□ -1.58
USP40-213ENST00000483216 XXYLT1Q8NBI6 393 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 DBF4BQ8NFT6 615 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 OR13C3Q8NGS6 347 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 OR2T6Q8NHC8 308 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 MRPS27Q92552 414 aaKnown RBP5.18□□□□□ -1.58
USP40-213ENST00000483216 CFAP57Q96MR6 1250 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 ZNF599Q96NL3 588 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 LRRC3BQ96PB8 259 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 FEVQ99581 238 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 SH3GL3Q99963 347 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 TRIM6Q9C030 488 aaPredicted RBP5.18□□□□□ -1.58
USP40-213ENST00000483216 MTMR12Q9C0I1 747 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 OR6C2Q9NZP2 312 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 CPSF3Q9UKF6 684 aaKnown RBP5.18□□□□□ -1.58
USP40-213ENST00000483216 EXOGQ9Y2C4 368 aaKnown RBP5.18□□□□□ -1.58
USP40-213ENST00000483216 TMED3Q9Y3Q3 217 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 RFX7Q2KHR2 1363 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 MPHOSPH10O00566 681 aaKnown RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 ARPC2O15144 300 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 TADA2AO75478 443 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 MYBL1P10243 752 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 SAGP10523 405 aaPredicted RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 GCFC2P16383 781 aaKnown RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 MC5RP33032 325 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 PRPHP41219 470 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 SLC6A12P48065 614 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 CLK1P49759 484 aaKnown RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 RAB28P51157 221 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 UBASH3AP57075 661 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 GNG11P61952 73 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 POLR2LP62875 67 aaKnown RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 MYL5Q02045 173 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 LCE1EQ5T753 118 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 FAAP20Q6NZ36 180 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 CROCCP2Q86T23 111 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 MMD2Q8IY49 270 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 CCDC170Q8IYT3 715 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 RAB42Q8N4Z0 105 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 ZNF614Q8N883 585 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 LSMEM1Q8N8F7 131 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 MSANTD4Q8NCY6 345 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 NEK11Q8NG66 645 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 MIPOL1Q8TD10 442 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 PIGBQ92521 554 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 MUS81Q96NY9 551 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 PANX2Q96RD6 677 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 CPNE1Q99829 537 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 BAG1Q99933 345 aaPredicted RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 FUT8Q9BYC5 575 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 PARD6BQ9BYG5 372 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 PPANQ9NQ55 473 aaKnown RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 RNF150Q9ULK6 438 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 WDR37Q9Y2I8 494 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 PRSS21Q9Y6M0 314 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 CHD2O14647 1828 aaKnown RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 PXDNLA1KZ92 1463 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 MAP3K19Q56UN5 1328 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 MAP3K15Q6ZN16 1313 aa5.17□□□□□ -1.58
USP40-213ENST00000483216 USP42Q9H9J4 1324 aaKnown RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 MARF1Q9Y4F3 1742 aaKnown RBP5.17□□□□□ -1.58
USP40-213ENST00000483216 O00370 1275 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 UBE2CO00762 179 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 ATP5BP06576 529 aaKnown RBP5.16□□□□□ -1.58
USP40-213ENST00000483216 UBTFL1P0CB47 393 aaPredicted RBP5.16□□□□□ -1.58
USP40-213ENST00000483216 IRF2P14316 349 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 CD22P20273 847 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 RWDD2BP57060 319 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 GCNT1Q02742 428 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 SPAG1Q07617 926 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 VEZF1Q14119 521 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 KYNUQ16719 465 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 PHKG1Q16816 387 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 IMMTQ16891 758 aaKnown RBP5.16□□□□□ -1.58
USP40-213ENST00000483216 SGSM1Q2NKQ1 1148 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 SPECC1LQ69YQ0 1117 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 ZBTB49Q6ZSB9 765 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 G2E3Q7L622 706 aa5.16□□□□□ -1.58
USP40-213ENST00000483216 NBPF5PQ86XG9 351 aaPredicted RBP5.16□□□□□ -1.58
USP40-213ENST00000483216 MLKLQ8NB16 471 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms