RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ATL1Q8WXF7 558 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 TUBB6Q9BUF5 446 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 AICDAQ9GZX7 198 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 RHOJQ9H4E5 214 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 GRHL1Q9NZI5 618 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 PLEKHB1Q9UF11 243 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-209ENST00000474432 ZNF860A6NHJ4 632 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 RAD51CO43502 376 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 GALR3O60755 368 aaPredicted RBP17.51■□□□□ 0.39
COL7A1-209ENST00000474432 SLC35G6P0C7Q6 338 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 SSTR1P30872 391 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 GRK3P35626 688 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 REEP5Q00765 189 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 PWP1Q13610 501 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 C18orf21Q32NC0 220 aaPredicted RBP17.51■□□□□ 0.39
COL7A1-209ENST00000474432 MINDY4Q4G0A6 757 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 THOC6Q86W42 341 aaKnown RBP17.51■□□□□ 0.39
COL7A1-209ENST00000474432 NKAPQ8N5F7 415 aaKnown RBP17.51■□□□□ 0.39
COL7A1-209ENST00000474432 SPATA4Q8NEY3 305 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 OR1N1Q8NGS0 311 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 NT5CQ8TCD5 201 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 VPS39Q96JC1 886 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 TSNARE1Q96NA8 513 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 TAAR6Q96RI8 345 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 ERP44Q9BS26 406 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 AGPAT4Q9NRZ5 378 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 SLC22A14Q9Y267 594 aa17.51■□□□□ 0.39
COL7A1-209ENST00000474432 MTO1Q9Y2Z2 717 aaKnown RBP17.51■□□□□ 0.39
COL7A1-209ENST00000474432 FAM187AA6NFU0 413 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 C4orf51C9J302 202 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 NDUFS4O43181 175 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 WDPCPO95876 746 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 F10P00742 488 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 SMIM10L1P0DMW3 83 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 ARG2P78540 354 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 CDKL1Q00532 357 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 CSHL1Q14406 222 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 TSNQ15631 228 aaKnown RBP17.5■□□□□ 0.39
COL7A1-209ENST00000474432 PLAG1Q6DJT9 500 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 H3F3CQ6NXT2 135 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 CAPN12Q6ZSI9 719 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 KLHDC8AQ8IYD2 350 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 C17orf53Q8N3J3 647 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-209ENST00000474432 PLPP5Q8NEB5 264 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 METTL21AQ8WXB1 218 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 PEX11GQ96HA9 241 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 SMIM10Q96HG1 83 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 NPAS2Q99743 824 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 SLX1AQ9BQ83 275 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 RBCK1Q9BYM8 510 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 SLC6A16Q9GZN6 736 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 RNF32Q9H0A6 362 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 DPH5Q9H2P9 285 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 PELI2Q9HAT8 420 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 WHRNQ9P202 907 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 ZFP69BQ9UJL9 534 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 OARD1Q9Y530 152 aa17.5■□□□□ 0.39
COL7A1-209ENST00000474432 WFS1O76024 890 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 DDAH2O95865 285 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 ICAM2P13598 275 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 ALOX12P18054 663 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 AHRP35869 848 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 SLC6A12P48065 614 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 OLR1P78380 273 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 HERC3Q15034 1050 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 DEFB134Q4QY38 66 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 NXPE4Q6UWF7 544 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 UTP15Q8TED0 518 aaKnown RBP17.49■□□□□ 0.39
COL7A1-209ENST00000474432 CREB3L4Q8TEY5 395 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 TSLPQ969D9 159 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 KLHL31Q9H511 634 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 CAB39LQ9H9S4 337 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 POPDC3Q9HBV1 291 aa17.49■□□□□ 0.39
COL7A1-209ENST00000474432 DIDO1Q9BTC0 2240 aaKnown RBP17.49■□□□□ 0.39
COL7A1-209ENST00000474432 CHST10O43529 356 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 CDC123O75794 336 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-209ENST00000474432 ZNF888P0CJ79 500 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-209ENST00000474432 EDN3P14138 238 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 GDF5P43026 501 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 TDGF1P3P51864 188 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 GPX6P59796 221 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 C2orf54Q08AI8 447 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 TRADDQ15628 312 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 MFSD4BQ5TF39 518 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 CYS1Q717R9 158 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 BBOF1Q8ND07 529 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 PYROXD1Q8WU10 500 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 RHBDF1Q96CC6 855 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 OR1F2PQ96R84 312 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 UNKQ9C0B0 810 aaKnown RBP17.48■□□□□ 0.39
COL7A1-209ENST00000474432 SAYSD1Q9NPB0 183 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 CTNNAL1Q9UBT7 734 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 SLC5A6Q9Y289 635 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 CROCCQ5TZA2 2017 aa17.48■□□□□ 0.39
COL7A1-209ENST00000474432 TRAV17A0A0B4J275 112 aa17.47■□□□□ 0.39
COL7A1-209ENST00000474432 TCRBV9S1A1TA0A576 114 aa17.47■□□□□ 0.39
COL7A1-209ENST00000474432 A1L4Q6 167 aa17.47■□□□□ 0.39
COL7A1-209ENST00000474432 DYTNA2CJ06 578 aa17.47■□□□□ 0.39
COL7A1-209ENST00000474432 PABPN1LA6NDY0 278 aaKnown RBP17.47■□□□□ 0.39
COL7A1-209ENST00000474432 FAM159BA6NKW6 160 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms