RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 SLCO3A1Q9UIG8 710 aa13.15□□□□□ -0.3
BRCA1-209ENST00000470026 SLC25A13Q9UJS0 675 aa13.15□□□□□ -0.3
BRCA1-209ENST00000470026 VPS4AQ9UN37 437 aa13.15□□□□□ -0.3
BRCA1-209ENST00000470026 PCDHGA2Q9Y5H1 932 aa13.15□□□□□ -0.3
BRCA1-209ENST00000470026 EFCAB9A8MZ26 197 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 ADAMDEC1O15204 470 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 TEX28O15482 410 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 BNIP3LO60238 219 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 ANXA4P09525 319 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-209ENST00000470026 CYP2A6P11509 494 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-209ENST00000470026 TIA1P31483 386 aaKnown RBP eCLIP13.14□□□□□ -0.31
BRCA1-209ENST00000470026 EIF2DP41214 584 aaKnown RBP13.14□□□□□ -0.31
BRCA1-209ENST00000470026 PPP5CP53041 499 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 PNLIPRP1P54315 467 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 CCL23P55773 120 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 NAE1Q13564 534 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 LRRC73Q5JTD7 316 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 PERM1Q5SV97 790 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 CCDC80Q76M96 950 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 COPS4Q9BT78 406 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 CFHR5Q9BXR6 569 aa13.14□□□□□ -0.31
BRCA1-209ENST00000470026 NXF2Q9GZY0 626 aaKnown RBP13.14□□□□□ -0.31
BRCA1-209ENST00000470026 METTL15A6NJ78 407 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 FADS2P1A8MWK0 482 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 PCDH7O60245 1069 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 CDK1P06493 297 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 IMPA1P29218 277 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 SLC19A1P41440 591 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 EEF1A2Q05639 463 aaKnown RBP13.13□□□□□ -0.31
BRCA1-209ENST00000470026 RBBP4Q09028 425 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 PPIGQ13427 754 aaKnown RBP eCLIP13.13□□□□□ -0.312e-6■■■■□ 20.9
BRCA1-209ENST00000470026 DDX39BQ13838 428 aaKnown RBP13.13□□□□□ -0.31
BRCA1-209ENST00000470026 CCSMST1Q4G0I0 132 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 ZNF385BQ569K4 471 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 PRSS36Q5K4E3 855 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 CATSPEREQ5SY80 951 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 ADNP2Q6IQ32 1131 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 SLCO4C1Q6ZQN7 724 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 Q6ZVU0 165 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 CADM3Q8N126 398 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 HUS1BQ8NHY5 278 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 MAL2Q969L2 176 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 VWCEQ96DN2 955 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 ZHX1-C8orf76Q96EF9 292 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 WDR34Q96EX3 536 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 VPS35Q96QK1 796 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 FEVQ99581 238 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 MMP27Q9H306 513 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 THSD1Q9NS62 852 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 RAD18Q9NS91 495 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 CLCA1A8K7I4 914 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 TNFRSF11BO00300 401 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 CATP04040 527 aaKnown RBP13.13□□□□□ -0.31
BRCA1-209ENST00000470026 ANXA8P13928 327 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 ZNF8P17098 575 aaPredicted RBP13.13□□□□□ -0.31
BRCA1-209ENST00000470026 MAPK9P45984 424 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 PRLHRP49683 370 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 PDE7AQ13946 482 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 INAVAQ3KP66 663 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 ZNF658BQ4V348 819 aaPredicted RBP13.13□□□□□ -0.31
BRCA1-209ENST00000470026 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.13□□□□□ -0.31
BRCA1-209ENST00000470026 TUBA3EQ6PEY2 450 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 Q6ZVL8 140 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 SLC46A3Q7Z3Q1 461 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 NLRP8Q86W28 1048 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 P3H2Q8IVL5 708 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 CCDC103Q8IW40 242 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 FBXO15Q8NCQ5 510 aaPredicted RBP13.13□□□□□ -0.31
BRCA1-209ENST00000470026 BTN2A2Q8WVV5 523 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 GGHQ92820 318 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 MYDGFQ969H8 173 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 PKP4Q99569 1192 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 ZSCAN5AQ9BUG6 496 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 SLC46A2Q9BY10 475 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 DCSTAMPQ9H295 470 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 TMEM38AQ9H6F2 299 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.13□□□□□ -0.31
BRCA1-209ENST00000470026 SPG21Q9NZD8 308 aa13.13□□□□□ -0.31
BRCA1-209ENST00000470026 PRAMEF25A6NGN4 478 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 AQP9O43315 295 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 SLC16A8O95907 504 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 VIPP01282 170 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 PABPC1P11940 636 aaKnown RBP13.12□□□□□ -0.31
BRCA1-209ENST00000470026 HLA-EP13747 358 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 TGFBR1P36897 503 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 LIMS1P48059 325 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 FCHO2Q0JRZ9 810 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 CDC20Q12834 499 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 IRF3Q14653 427 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 SPOUT1Q5T280 376 aaKnown RBP13.12□□□□□ -0.31
BRCA1-209ENST00000470026 C10orf62Q5T681 223 aaPredicted RBP13.12□□□□□ -0.31
BRCA1-209ENST00000470026 GPR153Q6NV75 609 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 Q6ZPB1 254 aaPredicted RBP13.12□□□□□ -0.31
BRCA1-209ENST00000470026 PAGE2Q7Z2X7 111 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 TECPR1Q7Z6L1 1165 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 DEFB128Q7Z7B8 93 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 SNX29P2Q8IUI4 249 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 PLD3Q8IV08 490 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 SLC5A8Q8N695 610 aa13.12□□□□□ -0.31
BRCA1-209ENST00000470026 SLAIN1Q8ND83 568 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms