RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MUL1Q969V5 352 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 MAGED4Q96JG8 741 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 C7orf34Q96L11 122 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 RHNO1Q9BSD3 238 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ASPSCR1Q9BZE9 553 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 THUMPD1Q9NXG2 353 aaKnown RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ERVK-18Q9QC07 812 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 PSME2Q9UL46 239 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 MRPS23Q9Y3D9 190 aaKnown RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 GMPPBQ9Y5P6 360 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 CHD9Q3L8U1 2897 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ANTXRLA6NF34 631 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 OTOL1A6NHN0 477 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 PSMD11O00231 422 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF197O14709 1029 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 SLC9A3R1O14745 358 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 CCDC159P0C7I6 412 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 TNFRSF1BP20333 461 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 CRATP43155 626 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 TAP2Q03519 686 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 AQP6Q13520 282 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 NFE2L1Q14494 772 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 GALNT18Q6P9A2 607 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 SLC16A12Q6ZSM3 486 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 CPA6Q8N4T0 437 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF740Q8NDX6 193 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 CIDECQ96AQ7 238 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 NUS1Q96E22 293 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 EPHX3Q9H6B9 360 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 REEP1Q9H902 201 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 GPN2Q9H9Y4 310 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ZDHHC4Q9NPG8 344 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 KIF17Q9P2E2 1029 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 NAALAD2Q9Y3Q0 740 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 PRKAB1Q9Y478 270 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 PCYT1BQ9Y5K3 369 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 KIAA1549LQ6ZVL6 1849 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 PIPSLA2A3N6 862 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 RNASET2O00584 256 aaKnown RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 SUV39H1O43463 412 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 TLL1O43897 1013 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 JRKO75564 520 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 KLHL18O94889 574 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 ZBTB11O95625 1053 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 C6orf47O95873 294 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 BCL10O95999 233 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 OPN1SWP03999 348 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 PRNPP04156 253 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 INHBBP09529 407 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 C1GALT1C1LP0DN25 315 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 C6P13671 934 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 ETFAP13804 333 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 CD6P30203 668 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 MAP2K4P45985 399 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 MVDP53602 400 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 MLLT10P55197 1068 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 ITGA1P56199 1179 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF763Q0D2J5 394 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 KEAP1Q14145 624 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 SPCS2Q15005 226 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 MPEG1Q2M385 716 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 BCL7AQ4VC05 210 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 FNDC3BQ53EP0 1204 aaKnown RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 C9orf64Q5T6V5 341 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 PIWIL3Q7Z3Z3 882 aaKnown RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 TSEN54Q7Z6J9 526 aaKnown RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 CCDC71Q8IV32 467 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 CROCCP3Q8IVE0 287 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 CELF5Q8N6W0 485 aaKnown RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 SETD9Q8NE22 299 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 OR9A1PQ8NGU1 263 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 FNDC8Q8TC99 324 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 FAR1Q8WVX9 515 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF566Q969W8 418 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF707Q96C28 371 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 IL17FQ96PD4 163 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 RAD9AQ99638 391 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 NRTNQ99748 197 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 SGPP1Q9BX95 441 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 TMEM121BQ9BXQ6 578 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 REEP4Q9H6H4 257 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 DMRT3Q9NQL9 472 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 RASSF1Q9NS23 344 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 KRT84Q9NSB2 600 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 ACSL6Q9UKU0 697 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 PLAGL1Q9UM63 463 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 DYRK1BQ9Y463 629 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 SH3PXD2BA1X283 911 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 M0QX08 132 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 LZTS3O60299 673 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 BCAS1O75363 584 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 POP7O75817 140 aaKnown RBP8.59□□□□□ -1.03
SYNE1-217ENST00000466159 PAPLNO95428 1278 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 TFPTP0C1Z6 253 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 ITIH1P19827 911 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 RRM2P31350 389 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 MAPK9P45984 424 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 GJA8P48165 433 aa8.59□□□□□ -1.03
SYNE1-217ENST00000466159 VASPP50552 380 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms