RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TSC22D4Q9Y3Q8 395 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 A0A1W2PRB8 838 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 DLGAP1O14490 977 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 ZNF8P17098 575 aaPredicted RBP11.52□□□□□ -0.56
SMPD4-213ENST00000454468 APOFQ13790 326 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 TMEM31Q5JXX7 168 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 PRAMEF14Q5SWL7 426 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 PRAMEF13Q5VWM6 474 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 FAM109BQ6ICB4 259 aaPredicted RBP11.52□□□□□ -0.56
SMPD4-213ENST00000454468 TMIGD1Q6UXZ0 262 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 SPRED1Q7Z699 444 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 ZCCHC7Q8N3Z6 543 aaKnown RBP11.52□□□□□ -0.56
SMPD4-213ENST00000454468 ARRDC3Q96B67 414 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 APOL4Q9BPW4 351 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 AMBRA1Q9C0C7 1298 aa11.52□□□□□ -0.56
SMPD4-213ENST00000454468 OTOL1A6NHN0 477 aaPredicted RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 NFATC1O95644 943 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 EN2P19622 333 aaPredicted RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 MATN1P21941 496 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 RNF144AP50876 292 aaPredicted RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 CSTF3Q12996 717 aaKnown RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 PPIGQ13427 754 aaKnown RBP eCLIP11.52□□□□□ -0.578e-7■■■□□ 15.7
SMPD4-213ENST00000454468 NPTX1Q15818 432 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 ATG9BQ674R7 924 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 VITQ6UXI7 678 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 LSRQ86X29 649 aaPredicted RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 FAM129CQ86XR2 697 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 ERI1Q8IV48 349 aaKnown RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 OR9A1PQ8NGU1 263 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 ISG20Q96AZ6 181 aaKnown RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 REPS1Q96D71 796 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 MCCC1Q96RQ3 725 aaPredicted RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 CPPED1Q9BRF8 314 aaPredicted RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 TRMT61BQ9BVS5 477 aaKnown RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 NLNQ9BYT8 704 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 SLC6A17Q9H1V8 727 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 VNN3Q9NY84 501 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 WASHC1A8K0Z3 465 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 C1QTNF3-AMACRE9PGA6 284 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 QSOX1O00391 747 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 MID1O15344 667 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 NDUFB5O43674 189 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 EIF2S1P05198 315 aaKnown RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 GSTM1P09488 218 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 CDK4P11802 303 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 ADRB3P13945 408 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 SSR2P43308 183 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 GSTM4Q03013 218 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 ELP6Q0PNE2 266 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 COX20Q5RI15 118 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 WASH2PQ6VEQ5 465 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 SNX29P2Q8IUI4 249 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 CLIP4Q8N3C7 705 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 STX19Q8N4C7 294 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 PHF10Q8WUB8 498 aaKnown RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 SLC5A11Q8WWX8 675 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 UHRF1Q96T88 793 aaPredicted RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 CEP44Q9C0F1 390 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 MTIF3Q9H2K0 278 aaKnown RBP11.52□□□□□ -0.57
SMPD4-213ENST00000454468 TMEM245Q9H330 911 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 RAD21L1Q9H4I0 556 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 ATAD3AQ9NVI7 634 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 FBXW2Q9UKT8 454 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 CCL27Q9Y4X3 112 aa11.52□□□□□ -0.57
SMPD4-213ENST00000454468 OR52A4PA6NMU1 304 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 ISM1B1AKI9 464 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 SOX14O95416 240 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 HBA1P69905 142 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 KIAA0040Q15053 153 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 ANKDD1AQ495B1 522 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 LIPJQ5W064 366 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 DCP2Q8IU60 420 aaKnown RBP11.51□□□□□ -0.57
SMPD4-213ENST00000454468 NLGN4XQ8N0W4 816 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 DDHD1Q8NEL9 900 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 GIPC3Q8TF64 312 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 FGF13Q92913 245 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 RAD51AP1Q96B01 352 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 ECHDC3Q96DC8 303 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 SPNS1Q9H2V7 528 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 SLC13A4Q9UKG4 626 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 PIPSLA2A3N6 862 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 J3KTA2 159 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 AP1G1O43747 822 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 MPC1LP0DKB6 136 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 DBTP11182 482 aaKnown RBP11.51□□□□□ -0.57
SMPD4-213ENST00000454468 CD247P20963 164 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 GDI1P31150 447 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 ASMTP46597 345 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 RAB8AP61006 207 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 VBP1P61758 197 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 SCARB2Q14108 478 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 RPS26P11Q5JNZ5 115 aaPredicted RBP11.51□□□□□ -0.57
SMPD4-213ENST00000454468 FAM78AQ5JUQ0 283 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 ADGRD2Q7Z7M1 963 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 BBS4Q96RK4 519 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 IL4I1Q96RQ9 567 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 C6orf62Q9GZU0 229 aaPredicted RBP11.51□□□□□ -0.57
SMPD4-213ENST00000454468 CUEDC1Q9NWM3 386 aaPredicted RBP11.51□□□□□ -0.57
SMPD4-213ENST00000454468 TPRKBQ9Y3C4 175 aa11.51□□□□□ -0.57
SMPD4-213ENST00000454468 H0YJX3 145 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms