RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 HTR3AP46098 478 aa8.7□□□□□ -1.02
NIPBL-202ENST00000448238 IRF5Q13568 498 aa8.7□□□□□ -1.02
NIPBL-202ENST00000448238 PCBP1Q15365 356 aaKnown RBP eCLIP8.7□□□□□ -1.02
NIPBL-202ENST00000448238 PROSER3Q2NL68 480 aa8.7□□□□□ -1.02
NIPBL-202ENST00000448238 RAVER1Q8IY67 606 aaKnown RBP8.7□□□□□ -1.02
NIPBL-202ENST00000448238 OR4C5Q8NGB2 326 aa8.7□□□□□ -1.02
NIPBL-202ENST00000448238 AENQ8WTP8 325 aaKnown RBP8.7□□□□□ -1.02
NIPBL-202ENST00000448238 MR1Q95460 341 aa8.7□□□□□ -1.02
NIPBL-202ENST00000448238 COL21A1Q96P44 957 aa8.7□□□□□ -1.02
NIPBL-202ENST00000448238 LRRC3Q9BY71 257 aa8.7□□□□□ -1.02
NIPBL-202ENST00000448238 ASF1BQ9NVP2 202 aa8.7□□□□□ -1.02
NIPBL-202ENST00000448238 K7EQM0 130 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ERBB2P04626 1255 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 IDSP22304 550 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 LPCAT4Q643R3 524 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PRAG1Q86YV5 1406 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 OR13C5Q8NGS8 318 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 OR13C2Q8NGS9 318 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 AURKBQ96GD4 344 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 TMEM74Q96NL1 305 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 GAD1Q99259 594 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ACTR10Q9NZ32 417 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 NESP48681 1621 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 A0A0A6YYH2 397 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 A6NJ64 397 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 SDC3O75056 442 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 KCNK5O95279 499 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 FCER1GP30273 86 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 CASP6P55212 293 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 RANP62826 216 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PLGLB1Q02325 96 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ADGRE1Q14246 886 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 VAMP3Q15836 100 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 FBXO31Q5XUX0 539 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 KIAA1161Q6NSJ0 714 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 RBM12BQ8IXT5 1001 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 OR4K17Q8NGC6 315 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 TMEM80Q96HE8 168 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 NOL4LQ96MY1 436 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PTGES2Q9H7Z7 377 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 FBXO6Q9NRD1 293 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PRELID3BQ9Y3B1 194 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 CXCR6O00574 342 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 GCNT1Q02742 428 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF92Q03936 586 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF543Q08ER8 600 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 MEDAGQ5VYS4 303 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 CEP68Q76N32 757 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 GTF2H4Q92759 462 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ASAH2Q9NR71 780 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 SNX15Q9NRS6 342 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 FAIMQ9NVQ4 179 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 NUDT4Q9NZJ9 180 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 EXOSC1Q9Y3B2 195 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 J3QLW9 94 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 HNRNPLP14866 589 aaKnown RBP eCLIP8.69□□□□□ -1.023e-7■■■□□ 16.3
NIPBL-202ENST00000448238 ZNF19P17023 458 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 NELFEP18615 380 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PRKCIP41743 596 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 HMGCS2P54868 508 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PRKCZQ05513 592 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 SNTB2Q13425 540 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 WDR45BQ5MNZ6 344 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 TNFAIP8L2Q6P589 184 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 SAMD12Q8N8I0 201 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PPP1R35Q8TAP8 253 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 CORO2AQ92828 525 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 CELF1Q92879 486 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 WNT8BQ93098 351 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 APOLD1Q96LR9 279 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 CASD1Q96PB1 797 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 HINT2Q9BX68 163 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 GRHPRQ9UBQ7 328 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 MITFO75030 526 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 MBP02144 154 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 H1F0P07305 194 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 NUDT1P36639 197 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 MAP2K3P46734 347 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 SCNN1GP51170 649 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF143P52747 638 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ERVK-25P63136 954 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PDLIM3Q53GG5 364 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ADGRF1Q5T601 910 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 TIGD3Q6B0B8 471 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 RBMS3Q6XE24 437 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 NRSN1Q8IZ57 195 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 PLA2G15Q8NCC3 412 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ZNRF4Q8WWF5 429 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF681Q96N22 645 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 GINS3Q9BRX5 216 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 VSX1Q9NZR4 365 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 EPHA6Q9UF33 1036 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 H0Y8G0 127 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 H7BYZ3 331 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 IGFBP1P08833 259 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 MGST1P10620 155 aaKnown RBP8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ETV1P50549 477 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 ST3GAL3Q11203 375 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 SLC17A1Q14916 467 aa8.69□□□□□ -1.02
NIPBL-202ENST00000448238 FAM171A1Q5VUB5 890 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms