RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 XPAP23025 273 aaPredicted RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 HMGCLP35914 325 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 CTSCP53634 463 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 LMAN2Q12907 356 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 GPR17Q13304 367 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 DOC2AQ14183 400 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 MAD2L1BPQ15013 274 aaPredicted RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 VMACQ2NL98 169 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 DHRS4L2Q6PKH6 230 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 RNF130Q86XS8 419 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 CCDC117Q8IWD4 279 aaPredicted RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 LGI4Q8N135 537 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 LZICQ8WZA0 190 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 APOL4Q9BPW4 351 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 CCL27Q9Y4X3 112 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 ANKDD1BA6NHY2 528 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 GABRR3A8MPY1 467 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 WASH4PA8MWX3 477 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 SLC28A1O00337 649 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 PRKRAO75569 313 aaKnown RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 KCNK5O95279 499 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 SLC16A8O95907 504 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 CLEC2LP0C7M8 214 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 ATF4P18848 351 aaPredicted RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 SNRPD2P62316 118 aaKnown RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 HOXC5Q00444 222 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 HSPB3Q12988 150 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 SPDYE7PQ495Y7 208 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 GPRC6AQ5T6X5 926 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 FRG2Q64ET8 278 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 PLEKHG7Q6ZR37 379 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 ZNF605Q86T29 641 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 CDH24Q86UP0 819 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 NXPE1Q8N323 547 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 JPH3Q8WXH2 748 aaPredicted RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 FRG2BQ96QU4 278 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 GFM1Q96RP9 751 aaKnown RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 TSPAN6O43657 245 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 EPOP01588 193 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 CYBAP13498 195 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 HLA-EP13747 358 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 ACRV1P26436 265 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 PIK3CBP42338 1070 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 OXA1LQ15070 435 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 CLEC12AQ5QGZ9 265 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 TRMT11Q7Z4G4 463 aaKnown RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 GPR149Q86SP6 731 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 DDX53Q86TM3 631 aaKnown RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 IFNL1Q8IU54 200 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 CYP4Z2PQ8N1L4 340 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 DPP10Q8N608 796 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 OR10G2Q8NGC3 310 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 OR6Q1Q8NGQ2 317 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 WDR48Q8TAF3 677 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 DUSP26Q9BV47 211 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 RIOK2Q9BVS4 552 aaKnown RBP8.34□□□□□ -1.07
USP40-203ENST00000427112 P2RY12Q9H244 342 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 GPR52Q9Y2T5 361 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 TMEM221A6NGB7 291 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 TTC34A8MYJ7 566 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 LOC110117498-PIK3R3F6TDL0 507 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 KPNA3O00505 521 aaPredicted RBP8.33□□□□□ -1.08
USP40-203ENST00000427112 PPM1DO15297 605 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 KIAA0513O60268 411 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 KLK1P06870 262 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 HTRA3P83110 453 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 CD83Q01151 205 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 HIST2H2ACQ16777 129 aaPredicted RBP8.33□□□□□ -1.08
USP40-203ENST00000427112 ZNF385BQ569K4 471 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 CPTPQ5TA50 214 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 C17orf99Q6UX52 265 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 SNX20Q7Z614 316 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 AKAP14Q86UN6 197 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 TRAPPC5Q8IUR0 188 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 MFSD4AQ8N468 514 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 PAPD5Q8NDF8 572 aaKnown RBP8.33□□□□□ -1.08
USP40-203ENST00000427112 OR8J3Q8NGG0 315 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 NACC2Q96BF6 587 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 DHRS1Q96LJ7 313 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 DOK1Q99704 481 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 TRIT1Q9H3H1 467 aaKnown RBP8.33□□□□□ -1.08
USP40-203ENST00000427112 SEC16AO15027 2179 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 ILVBLA1L0T0 632 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 INPPL1O15357 1258 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 CCL16O15467 120 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 ADAMTS4O75173 837 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 GSTM1P09488 218 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 SPAM1P38567 509 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 RFX3P48380 749 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 SLC35A2P78381 396 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 DSC1Q08554 894 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 MAP4K2Q12851 820 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 INSL4Q14641 139 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 KIAA1614Q5VZ46 1190 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 OR9Q1Q8NGQ5 310 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 WFDC6Q9BQY6 131 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 QRSL1Q9H0R6 528 aaKnown RBP8.33□□□□□ -1.08
USP40-203ENST00000427112 SLC32A1Q9H598 525 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 AKIP1Q9NQ31 210 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 TRAV19A0A0A6YYK7 116 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms