RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 ATG9BQ674R7 924 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 ATG14Q6ZNE5 492 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 LRRC70Q7Z2Q7 622 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 ISCA2Q86U28 154 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 CNPY4Q8N129 248 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 GALNT16Q8N428 558 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 ARHGEF39Q8N4T4 335 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 AMER3Q8N944 861 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 TEX19Q8NA77 164 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 KCT2Q8NC54 265 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 OR9A4Q8NGU2 314 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 RHEBL1Q8TAI7 183 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 UHMK1Q8TAS1 419 aaKnown RBP10.38□□□□□ -0.75
USP49-204ENST00000423567 KCTD4Q8WVF5 259 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 METTL21AQ8WXB1 218 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 CCT6BQ92526 530 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 NXNL1Q96CM4 212 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 TMEM79Q9BSE2 394 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 TGIF2Q9GZN2 237 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 PITHD1Q9GZP4 211 aaPredicted RBP10.38□□□□□ -0.75
USP49-204ENST00000423567 L2HGDHQ9H9P8 463 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 GPR83Q9NYM4 423 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 ZNF180Q9UJW8 692 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 ANAPC2Q9UJX6 822 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 FBXL4Q9UKA2 621 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 MRPS2Q9Y399 296 aaKnown RBP10.38□□□□□ -0.75
USP49-204ENST00000423567 ZNF451Q9Y4E5 1061 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 ANGPTL3Q9Y5C1 460 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 LOC400499M0QZD8 3231 aa10.38□□□□□ -0.75
USP49-204ENST00000423567 HMX2A2RU54 273 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 IDSB3KWA1 339 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 SGK494L7N484 410 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 UBXN8O00124 270 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 FFAR3O14843 346 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 SEC16AO15027 2179 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 GPR42O15529 346 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 TAPBPO15533 448 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 KLHL18O94889 574 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 ALDOAP04075 364 aaKnown RBP10.37□□□□□ -0.75
USP49-204ENST00000423567 GFAPP14136 432 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 ALOX12P18054 663 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 ITGA3P26006 1051 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 GMPRP36959 345 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 XCR1P46094 333 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 GLRBP48167 497 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 MAT1AQ00266 395 aaKnown RBP10.37□□□□□ -0.75
USP49-204ENST00000423567 IRF9Q00978 393 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 IRF8Q02556 426 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 DLG1Q12959 904 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 AIMP2Q13155 320 aaKnown RBP10.37□□□□□ -0.75
USP49-204ENST00000423567 LAPTM5Q13571 262 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 SLBPQ14493 270 aaKnown RBP eCLIP10.37□□□□□ -0.75
USP49-204ENST00000423567 HIST2H2ACQ16777 129 aaPredicted RBP10.37□□□□□ -0.75
USP49-204ENST00000423567 TSNAXIP1Q2TAA8 658 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 FBXO48Q5FWF7 155 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 XKR6Q5GH73 641 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 UBAP2Q5T6F2 1119 aaKnown RBP10.37□□□□□ -0.75
USP49-204ENST00000423567 HIST2H2AA3Q6FI13 130 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 BLOC1S3Q6QNY0 202 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 TMIGD1Q6UXZ0 262 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 SLCO4C1Q6ZQN7 724 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 HPS6Q86YV9 775 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 CENPLQ8N0S6 344 aaPredicted RBP10.37□□□□□ -0.75
USP49-204ENST00000423567 ZNF740Q8NDX6 193 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 OR51Q1Q8NH59 317 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 NT5CQ8TCD5 201 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 ESAMQ96AP7 390 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 PTCD3Q96EY7 689 aaKnown RBP10.37□□□□□ -0.75
USP49-204ENST00000423567 SEC16BQ96JE7 1060 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 ATOH8Q96SQ7 321 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 CCDC77Q9BR77 488 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 EFCAB11Q9BUY7 163 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 CD244Q9BZW8 370 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 SPNS1Q9H2V7 528 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 EHD1Q9H4M9 534 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 HCN3Q9P1Z3 774 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 OPTCQ9UBM4 332 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 PTBP2Q9UKA9 531 aaKnown RBP10.37□□□□□ -0.75
USP49-204ENST00000423567 NAALAD2Q9Y3Q0 740 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 HS3ST3B1Q9Y662 390 aa10.37□□□□□ -0.75
USP49-204ENST00000423567 ATRXP46100 2492 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 PCM1Q15154 2024 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 PIEZO2Q9H5I5 2752 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 A0A088AWK7 358 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 ANKDD1BA6NHY2 528 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 TRIM49D1C9J1S8 452 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 SOCS6O14544 535 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 RIPK2O43353 540 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 DPM1O60762 260 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 RDH16O75452 317 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 CEACAM4O75871 244 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 SERPINA6P08185 405 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 CYC1P08574 325 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 SNRPAP09012 282 aaKnown RBP10.36□□□□□ -0.75
USP49-204ENST00000423567 RBP1P09455 135 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 ZNF888P0CJ79 500 aaPredicted RBP10.36□□□□□ -0.75
USP49-204ENST00000423567 EPB42P16452 691 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 NR1D1P20393 614 aa10.36□□□□□ -0.75
USP49-204ENST00000423567 ZNF10P21506 573 aaPredicted RBP10.36□□□□□ -0.75
USP49-204ENST00000423567 IL10P22301 178 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms