RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ABHD16BQ9H3Z7 469 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 B3GNT2Q9NY97 397 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 PLXNA4Q9HCM2 1894 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 TEX51A0A1B0GUA7 166 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 MAGEB17A8MXT2 336 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 H7C0S8 307 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 NFKBIEO00221 500 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 SCAMP3O14828 347 aaKnown RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 SUV39H1O43463 412 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 SNAI1O95863 264 aaPredicted RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 NUDT7P0C024 238 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 EPORP19235 508 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 GPC1P35052 558 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 RUNX1T1Q06455 604 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 PTPRRQ15256 657 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 CPSF6Q16630 551 aaKnown RBP eCLIP10.31□□□□□ -0.76
USP54-204ENST00000422491 HKDC1Q2TB90 917 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 RASAL3Q86YV0 1011 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 TMC8Q8IU68 726 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 FAM217AQ8IXS0 508 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 FAM9CQ8IZT9 166 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 UBE2J2Q8N2K1 259 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 OR6J1Q8NGC5 347 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 MSLNLQ96KJ4 702 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 DOHHQ9BU89 302 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 APOL5Q9BWW9 433 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 HDHD5Q9BXW7 423 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 FAM126AQ9BYI3 521 aaPredicted RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 CHST8Q9H2A9 424 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 EIF3KQ9UBQ5 218 aaKnown RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 NUP50Q9UKX7 468 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 ALG5Q9Y673 324 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 UTRNP46939 3433 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 GREB1Q4ZG55 1949 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 ADM5C9JUS6 153 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 PSKH1P11801 424 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 EPB42P16452 691 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 PRPH2P23942 346 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 HOXD9P28356 352 aaPredicted RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 BRCC3P46736 316 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 ALDH9A1P49189 494 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 MICAQ29983 383 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 DUSP28Q4G0W2 176 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 FAM205BPQ63HN1 556 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 ZNF621Q6ZSS3 439 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 LGI4Q8N135 537 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 CAMKK1Q8N5S9 505 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 ESX1Q8N693 406 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 LPCAT1Q8NF37 534 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 ENKURQ8TC29 256 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 CREB3L4Q8TEY5 395 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 SLC25A46Q96AG3 418 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 APIPQ96GX9 242 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 RPRD1AQ96P16 312 aaPredicted RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 ABCG8Q9H221 673 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 SEC14L4Q9UDX3 406 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 SLC23A1Q9UHI7 598 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 TEKT2Q9UIF3 430 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 ALPK3Q96L96 1907 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 A0A0D9SEW6 157 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 HYKKA2RU49 373 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 FABP12A6NFH5 140 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 A8MVJ9 347 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 TREHO43280 583 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 GCM2O75603 506 aaPredicted RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 CCNB2O95067 398 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 CLDN9O95484 217 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 LGI1O95970 557 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 IGHA2P01877 340 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 PIPP12273 146 aaPredicted RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 CTPS1P17812 591 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 CR2P20023 1033 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 POU3F3P20264 500 aaPredicted RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 PSMA1P25786 263 aaKnown RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 CRYBB1P53674 252 aaPredicted RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 PTGES3Q15185 160 aaKnown RBP10.31□□□□□ -0.76
USP54-204ENST00000422491 PDZK1Q5T2W1 519 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 SDE2Q6IQ49 451 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 PLET1Q6UQ28 207 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 METTL23Q86XA0 190 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 STK40Q8N2I9 435 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 OR9Q2Q8NGE9 314 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 OR52J3Q8NH60 311 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 LKAAEAR1Q8TD35 194 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 LPPQ93052 612 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 EXOC2Q96KP1 924 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 PSKH2Q96QS6 385 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 CIPCQ9C0C6 399 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 SH3BP4Q9P0V3 963 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 OGDHLQ9ULD0 1010 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 STUB1Q9UNE7 303 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 MAPRE3Q9UPY8 281 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 HSPB11Q9Y547 144 aa10.31□□□□□ -0.76
USP54-204ENST00000422491 TRIP12Q14669 1992 aaPredicted RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 CHD5Q8TDI0 1954 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 A0A1W2PQL4 384 aaPredicted RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 AGRPO00253 132 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 INSIG1O15503 277 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 TMCC2O75069 709 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 CSO75390 466 aaKnown RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms