RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CCT6BQ92526 530 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 RNF166Q96A37 237 aaPredicted RBP11.86□□□□□ -0.51
SKA1-203ENST00000417656 COL26A1Q96A83 441 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 FKBP10Q96AY3 582 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 TMEM237Q96Q45 408 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 C17orf62Q9BQA9 187 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 GPR87Q9BY21 358 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 ACTR8Q9H981 624 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 ZNF304Q9HCX3 659 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 MKS1Q9NXB0 559 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 COPG2Q9UBF2 871 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 FARSAQ9Y285 508 aaKnown RBP11.86□□□□□ -0.51
SKA1-203ENST00000417656 PADI2Q9Y2J8 665 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 DSPP15924 2871 aaKnown RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 CDC14CA4D256 554 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 ZNF860A6NHJ4 632 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 C4orf51C9J302 202 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 OR7A17O14581 309 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 PLIN3O60664 434 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 CREG1O75629 220 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 WFS1O76024 890 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 ONECUT2O95948 504 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 B3GALT4O96024 378 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 ZNF888P0CJ79 500 aaPredicted RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 MYL2P10916 166 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 TSPAN8P19075 237 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 ATP5F1P24539 256 aaPredicted RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 ARL1P40616 181 aaPredicted RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 HNF4AP41235 474 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 CASP2P42575 452 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 CCT5P48643 541 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 MAT1AQ00266 395 aaKnown RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 HYAL2Q12891 473 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 TRAF3Q13114 568 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 LAPTM5Q13571 262 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 PWP1Q13610 501 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 DSG2Q14126 1118 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 ERV3-1Q14264 604 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 SYT16Q17RD7 645 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 MRPL14Q6P1L8 145 aaKnown RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 METTL2BQ6P1Q9 378 aaKnown RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 ZYG11AQ6WRX3 759 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 GPR155Q7Z3F1 870 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 SYVN1Q86TM6 617 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 PDSS2Q86YH6 399 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 IQCKQ8N0W5 287 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 AMER3Q8N944 861 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 TRPV3Q8NET8 790 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 TTLQ8NG68 377 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 OR52B6Q8NGF0 335 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 SNRNP27Q8WVK2 155 aaKnown RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 MVB12AQ96EY5 273 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 MMABQ96EY8 250 aaPredicted RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 CDK15Q96Q40 435 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 SLC6A16Q9GZN6 736 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 PITHD1Q9GZP4 211 aaPredicted RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 AICDAQ9GZX7 198 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 NT5DC2Q9H857 520 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 NOL11Q9H8H0 719 aaKnown RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 IPPKQ9H8X2 491 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 ZBTB26Q9HCK0 441 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 PRM3Q9NNZ6 103 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 SEMA4BQ9NPR2 832 aaPredicted RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 TCFL5Q9UL49 500 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 ZNF490Q9ULM2 529 aaPredicted RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 LHX6Q9UPM6 363 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 PTRH2Q9Y3E5 179 aaKnown RBP11.85□□□□□ -0.51
SKA1-203ENST00000417656 ITPR1Q14643 2758 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 NUP210LQ5VU65 1888 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 PCSK5Q92824 1860 aa11.85□□□□□ -0.51
SKA1-203ENST00000417656 G3V2L1 256 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 SGK494L7N484 410 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 RGS16O15492 202 aaPredicted RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 PRPF4O43172 522 aaKnown RBP eCLIP11.84□□□□□ -0.51
SKA1-203ENST00000417656 CTIFO43310 598 aaKnown RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 SPAG7O75391 227 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 RDH16O75452 317 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 KLF7O75840 302 aaPredicted RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 KLHL18O94889 574 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 NSA2O95478 260 aaKnown RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 FURINP09958 794 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 PIM1P11309 404 aaPredicted RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 PCNAP12004 261 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 CREB1P16220 341 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 GSTM2P28161 218 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 HNRNPH1P31943 449 aaKnown RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 FOLR3P41439 243 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 AVPR1BP47901 424 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 CCNG1P51959 295 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 CDH13P55290 713 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 HERVK_113P63132 956 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 MC1RQ01726 317 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 PCDH1Q08174 1060 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 DDX39BQ13838 428 aaKnown RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 FAM53BQ14153 422 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 RBBP7Q16576 425 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 HIST2H2ACQ16777 129 aaPredicted RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 CCDC153Q494R4 210 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 ZNF678Q5SXM1 525 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 FAM219BQ5XKK7 198 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms