RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 RNF148Q8N7C7 305 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CDYL2Q8N8U2 506 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 OR4F6Q8NGB9 312 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 OR52B6Q8NGF0 335 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 OR56A3Q8NH54 315 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 METTL6Q8TCB7 284 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ESAMQ96AP7 390 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 PYCR2Q96C36 320 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SPDL1Q96EA4 605 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 MED8Q96G25 268 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CD244Q9BZW8 370 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 VCXQ9H320 206 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 MUC13Q9H3R2 512 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SLC52A3Q9NQ40 469 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 WWOXQ9NZC7 414 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 MAP10Q9P2G4 905 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 OPTCQ9UBM4 332 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 TRPS1Q9UHF7 1281 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 RIMS3Q9UJD0 308 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 COL5A1P20908 1838 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 FAM234BA2RU67 622 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 GSAPA4D1B5 854 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 PRORSD1PA6NEY8 169 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ISM1B1AKI9 464 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 K7EPI3 171 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 DUX1O43812 170 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 EEDO75530 441 aaKnown RBP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SLC22A3O75751 556 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SMNDC1O75940 238 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 NPPAP01160 153 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CAPNS1P04632 268 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CAPN1P07384 714 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 PEX2P28328 305 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 HMOX2P30519 316 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CAPZBP47756 277 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 HSPA7P48741 367 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SLC7A2P52569 658 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 RHDQ02161 417 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CFHR1Q03591 330 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 EMX2Q04743 252 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 BNIP2Q12982 314 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 TRAF3Q13114 568 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 KIR2DS3Q14952 304 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 RSPO4Q2I0M5 234 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 PTCHD3Q3KNS1 767 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 C6orf136Q5SQH8 315 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 FAM219BQ5XKK7 198 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 LPCAT4Q643R3 524 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CAPN13Q6MZZ7 669 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 MILR1Q7Z6M3 343 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SNX31Q8N9S9 440 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 GOLM1Q8NBJ4 401 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ADCY4Q8NFM4 1077 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 OR2T11Q8NH01 316 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ATP6V1E2Q96A05 226 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ZUFSPQ96AP4 578 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 NTMT1Q9BV86 223 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 TRIM15Q9C019 465 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 TWSG1Q9GZX9 223 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 IPPKQ9H8X2 491 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 INTS7Q9NVH2 962 aaKnown RBP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ACTR10Q9NZ32 417 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 LEF1Q9UJU2 399 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 DTNAQ9Y4J8 743 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ANGPTL3Q9Y5C1 460 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ENTPD2Q9Y5L3 495 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ASXL3Q9C0F0 2248 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 SPAARA0A1B0GVQ0 90 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 A0A1W2PPV9 198 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 TCRBV3S1A0A5B6 114 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 A6NHS1 94 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 C2orf74A8MZ97 194 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 CAPN5O15484 640 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-204ENST00000409441 PRICKLE3O43900 615 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-204ENST00000409441 STK16O75716 305 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 CEACAM1P13688 526 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 HSD17B1P14061 328 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 HOXB3P14651 431 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-204ENST00000409441 UQCRBP14927 111 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 PEBP1P30086 187 aaKnown RBP12.87□□□□□ -0.35
LIMS1-204ENST00000409441 DIO3P55073 304 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 PPP1CAP62136 330 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 E2F1Q01094 437 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 SF1Q15637 639 aaKnown RBP12.87□□□□□ -0.35
LIMS1-204ENST00000409441 SFT2D3Q587I9 215 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 THEMIS2Q5TEJ8 643 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 WDR74Q6RFH5 385 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-204ENST00000409441 Q6ZSR9 355 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 PLXDC1Q8IUK5 500 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 ICA1LQ8NDH6 482 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 GATA6Q92908 595 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 SLC22A18Q96BI1 424 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 PPP3R2Q96LZ3 170 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 OR2A14Q96R47 310 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 TMEM79Q9BSE2 394 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 ACAT2Q9BWD1 397 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 SGPP1Q9BX95 441 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 SLC29A3Q9BZD2 475 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 RAB33BQ9H082 229 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 SYNDIG1Q9H7V2 258 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms