RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PSD3Q9NYI0 1048 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 AKAP7Q9P0M2 348 aaPredicted RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 VPS29Q9UBQ0 182 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 HCRTR1O43613 425 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 PEX11AO75192 247 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 VPS4BO75351 444 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 SERPINA6P08185 405 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 FTH1P19P0C7X4 201 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 FOLR1P15328 257 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 NOVA1P51513 510 aaKnown RBP17.25■□□□□ 0.35
SDC1-203ENST00000403076 RAP1GDS1P52306 607 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 ZFP36L1Q07352 338 aaKnown RBP17.25■□□□□ 0.35
SDC1-203ENST00000403076 PWP1Q13610 501 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 GPR19Q15760 415 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 ATP6AP1LQ52LC2 224 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 WASHC2DQ5SRD0 308 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 Q6ZSR9 355 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 CSNK1A1LQ8N752 337 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 OR2T11Q8NH01 316 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 BCAS4Q8TDM0 211 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 PPP3R2Q96LZ3 170 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 F2RL3Q96RI0 385 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 EBF4Q9BQW3 602 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 SYNPO2LQ9H987 977 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 KCNK13Q9HB14 408 aa17.25■□□□□ 0.35
SDC1-203ENST00000403076 TMEM150CB9EJG8 249 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 TMX2-CTNND1H3BSU7 103 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 SAP18O00422 153 aaKnown RBP17.24■□□□□ 0.35
SDC1-203ENST00000403076 TXNDC9O14530 226 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 NDUFAB1O14561 156 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 TM4SF5O14894 197 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 SNX3O60493 162 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 SEC22BO75396 215 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 MT-CO3P00414 261 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 CEACAM1P13688 526 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 STXBP1P61764 594 aaKnown RBP17.24■□□□□ 0.35
SDC1-203ENST00000403076 ACY1Q03154 408 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 XKR7Q5GH72 579 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 TOR1AIP1Q5JTV8 583 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 TCTE1Q5JU00 501 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 DEPDC1Q5TB30 811 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 GKAP1Q5VSY0 366 aaPredicted RBP17.24■□□□□ 0.35
SDC1-203ENST00000403076 KHDRBS2Q5VWX1 349 aaKnown RBP17.24■□□□□ 0.35
SDC1-203ENST00000403076 AGBL5Q8NDL9 886 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 CEP70Q8NHQ1 597 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 TM4SF19Q96DZ7 209 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 OR52B2Q96RD2 323 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 STRADBQ9C0K7 418 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 AKTIPQ9H8T0 292 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 LRTM1Q9HBL6 345 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 TCF7L2Q9NQB0 619 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 FGF21Q9NSA1 209 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 STARD5Q9NSY2 213 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 GIMAP2Q9UG22 337 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 PPT2Q9UMR5 302 aa17.24■□□□□ 0.35
SDC1-203ENST00000403076 MDC1Q14676 2089 aaKnown RBP17.24■□□□□ 0.35
SDC1-203ENST00000403076 URADA6NGE7 173 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 P2RX6O15547 441 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 RSL1D1O76021 490 aaKnown RBP17.23■□□□□ 0.35
SDC1-203ENST00000403076 ETHE1O95571 254 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 GABRA4P48169 554 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 CLDN6P56747 220 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 FOXM1Q08050 763 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 CUL3Q13618 768 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 C16orf72Q14CZ0 275 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 AP5B1Q2VPB7 878 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 PIGWQ7Z7B1 504 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 GPR135Q8IZ08 494 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 NT5CQ8TCD5 201 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 ACTRT2Q8TDY3 377 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 REXO4Q9GZR2 422 aaKnown RBP17.23■□□□□ 0.35
SDC1-203ENST00000403076 C1orf109Q9NX04 203 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 AHSPQ9NZD4 102 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 SERTAD3Q9UJW9 196 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 CCL27Q9Y4X3 112 aa17.23■□□□□ 0.35
SDC1-203ENST00000403076 ZNF292O60281 2723 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 LRIT2A6NDA9 550 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 ZSCAN9O15535 394 aaPredicted RBP17.22■□□□□ 0.35
SDC1-203ENST00000403076 OR2B3O76000 313 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 LBPP18428 481 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 CCKBRP32239 447 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 PDX1P52945 283 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 TGM3Q08188 693 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 ACSM2AQ08AH3 577 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 TUBB3Q13509 450 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 HKDC1Q2TB90 917 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 LSM12Q3MHD2 195 aaKnown RBP17.22■□□□□ 0.35
SDC1-203ENST00000403076 TMEM35AQ53FP2 167 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 MANEAQ5SRI9 462 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 HES3Q5TGS1 186 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 ACSM2BQ68CK6 577 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 TTC29Q8NA56 475 aaPredicted RBP17.22■□□□□ 0.35
SDC1-203ENST00000403076 KCT2Q8NC54 265 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 SRFBP1Q8NEF9 429 aaKnown RBP17.22■□□□□ 0.35
SDC1-203ENST00000403076 ZCCHC10Q8TBK6 192 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 C10orf82Q8WW14 230 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 RGMAQ96B86 450 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 MAELQ96JY0 434 aaKnown RBP17.22■□□□□ 0.35
SDC1-203ENST00000403076 DEPDC7Q96QD5 511 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 CCDC28BQ9BUN5 200 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms