RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.6□□□□□ -0.23
SKA1-202ENST00000398452 ZNF740Q8NDX6 193 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 SRFBP1Q8NEF9 429 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 FLVCR1-AS1Q8TAF5 88 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 SLC13A3Q8WWT9 602 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 MAELQ96JY0 434 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 QRFPRQ96P65 431 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 TRAPPC9Q96Q05 1148 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 OR52B2Q96RD2 323 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 GFM1Q96RP9 751 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 TUBB1Q9H4B7 451 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 DMRT3Q9NQL9 472 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 FARSBQ9NSD9 589 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 G3BP2Q9UN86 482 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 BTBD3Q9Y2F9 522 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 TMED5Q9Y3A6 229 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 PTGDR2Q9Y5Y4 395 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 PCM1Q15154 2024 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 ASCC3Q8N3C0 2202 aaKnown RBP13.59□□□□□ -0.23
SKA1-202ENST00000398452 CABIN1Q9Y6J0 2220 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 IGKV1-8A0A0C4DH67 115 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 CDX4O14627 284 aaPredicted RBP13.59□□□□□ -0.23
SKA1-202ENST00000398452 TM4SF5O14894 197 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 TOX3O15405 576 aaPredicted RBP13.59□□□□□ -0.23
SKA1-202ENST00000398452 NDUFS4O43181 175 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 KCNK5O95279 499 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 TGFB1P01137 390 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 GP1BAP07359 652 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 ST6GAL1P15907 406 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 CD1CP29017 333 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 NOVA1P51513 510 aaKnown RBP13.59□□□□□ -0.23
SKA1-202ENST00000398452 GFERP55789 205 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 ERVK-8P63133 956 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 CCL7P80098 99 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 SPIDRQ14159 915 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 TMEM35AQ53FP2 167 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 KMT5CQ86Y97 462 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 METTL2AQ96IZ6 378 aaKnown RBP13.59□□□□□ -0.23
SKA1-202ENST00000398452 SARGQ9BW04 601 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 ACPTQ9BZG2 426 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 TWSG1Q9GZX9 223 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 SPNS1Q9H2V7 528 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 FANCEQ9HB96 536 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 NOP53Q9NZM5 478 aaKnown RBP13.59□□□□□ -0.23
SKA1-202ENST00000398452 PPT2Q9UMR5 302 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 RUVBL1Q9Y265 456 aaKnown RBP13.59□□□□□ -0.23
SKA1-202ENST00000398452 KLK4Q9Y5K2 254 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 AP1M2Q9Y6Q5 423 aa13.59□□□□□ -0.23
SKA1-202ENST00000398452 A0A088AWK7 358 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 LY6G6EA0A0G2JKS1 128 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 A8MU76 341 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 LSM1O15116 133 aaKnown RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 SH3BP5O60239 455 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 SH3BGRLO75368 114 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 C9P02748 559 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 EIF2S1P05198 315 aaKnown RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 IDO1P14902 403 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 ZNF10P21506 573 aaPredicted RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 PRPH2P23942 346 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 ACP1P24666 158 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 BCL6P41182 706 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 SEPHS1P49903 392 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 PPP1CAP62136 330 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 HSD11B2P80365 405 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 EMX2Q04743 252 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 SQSTM1Q13501 440 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 PWP1Q13610 501 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 CUL3Q13618 768 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 GSTA3Q16772 222 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 C6orf136Q5SQH8 315 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 KHDRBS2Q5VWX1 349 aaKnown RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 FCRL6Q6DN72 434 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 TRIM40Q6P9F5 258 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 CYB5D1Q6P9G0 228 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 Q6ZSR9 355 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 LARP4Q71RC2 724 aaKnown RBP eCLIP13.58□□□□□ -0.24
SKA1-202ENST00000398452 PRSS42Q7Z5A4 293 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 MTDHQ86UE4 582 aaKnown RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 ZFAND4Q86XD8 727 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 RGMAQ96B86 450 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 PRR11Q96HE9 360 aaPredicted RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 C3orf30Q96M34 536 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 CATSPER2Q96P56 530 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 REXO4Q9GZR2 422 aaKnown RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 COPS7BQ9H9Q2 264 aaPredicted RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 AKAP7Q9P0M2 348 aaPredicted RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 U3KQA8 63 aa13.58□□□□□ -0.24
SKA1-202ENST00000398452 MN1Q10571 1320 aaPredicted RBP13.58□□□□□ -0.24
SKA1-202ENST00000398452 FCHO1O14526 889 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 ZSCAN9O15535 394 aaPredicted RBP13.57□□□□□ -0.24
SKA1-202ENST00000398452 LCMT2O60294 686 aaKnown RBP13.57□□□□□ -0.24
SKA1-202ENST00000398452 SRPX2O60687 465 aaPredicted RBP13.57□□□□□ -0.24
SKA1-202ENST00000398452 SEMA3DO95025 777 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 PRPS2P11908 318 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 CD59P13987 128 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 LSSP48449 732 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 SKP1P63208 163 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 E2F1Q01094 437 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 SQLEQ14534 574 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 NDUFA9Q16795 377 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms