RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 GPR137CQ8N3F9 429 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 CLDN19Q8N6F1 224 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 OR4K14Q8NGD5 310 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 PCDH19Q8TAB3 1148 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 CPT1BQ92523 772 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 NSMAFQ92636 917 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 NEDD4LQ96PU5 975 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 FCRL5Q96RD9 977 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 CCNL2Q96S94 520 aaPredicted RBP6.98□□□□□ -1.29
UPF2-203ENST00000397053 NMUR2Q9GZQ4 415 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 TMEM168Q9H0V1 697 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 OR51B5Q9H339 312 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 ERVK-5Q9HDB9 667 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 CDH22Q9UJ99 828 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 RAB21Q9UL25 225 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 TRBC2A0A5B9 178 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 OR51F1A6NGY5 319 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 C2CD4BA6NLJ0 364 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 C11orf98E9PRG8 122 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 LEFTY2O00292 366 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 TRMUO75648 421 aaKnown RBP6.98□□□□□ -1.29
UPF2-203ENST00000397053 CH25HO95992 272 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 HTR1AP08908 422 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 IFI30P13284 250 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 CBLP22681 906 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 STOMP27105 288 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 HNF1BP35680 557 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 POLR2HP52434 150 aaKnown RBP6.98□□□□□ -1.29
UPF2-203ENST00000397053 ZNF460Q14592 562 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 CDKL4Q5MAI5 379 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 KCTD18Q6PI47 426 aaPredicted RBP6.98□□□□□ -1.29
UPF2-203ENST00000397053 CEACAM20Q6UY09 585 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 TICAM1Q8IUC6 712 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 PLXDC1Q8IUK5 500 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 DCAF4L2Q8NA75 395 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 GATSQ8NAP1 163 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 THAP6Q8TBB0 222 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 NELL2Q99435 816 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 NAA11Q9BSU3 229 aaPredicted RBP6.98□□□□□ -1.29
UPF2-203ENST00000397053 POLDIP3Q9BY77 421 aaKnown RBP6.98□□□□□ -1.29
UPF2-203ENST00000397053 HPF1Q9NWY4 346 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 LAMP5Q9UJQ1 280 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 FZD4Q9ULV1 537 aa6.98□□□□□ -1.29
UPF2-203ENST00000397053 R3HDM2Q9Y2K5 976 aaKnown RBP6.98□□□□□ -1.29
UPF2-203ENST00000397053 C13orf42A0A1B0GVH6 325 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 A0A1B0GVT2 93 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 CLDN25C9JDP6 229 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 J3QLW9 94 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 M0QX08 132 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 DNM1LO00429 736 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 CNTN5O94779 1100 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 H6PDO95479 791 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 RHOP08100 348 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 ANXA3P12429 323 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 ZNF19P17023 458 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 ERVK-8P63133 956 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 ELF3P78545 371 aaPredicted RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 CDK6Q00534 326 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 PKDCCQ504Y2 493 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 SHQ1Q6PI26 577 aaKnown RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 ZNF572Q7Z3I7 529 aaPredicted RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 SH3RF1Q7Z6J0 888 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 TRAPPC6BQ86SZ2 158 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 PIM3Q86V86 326 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 THOC6Q86W42 341 aaKnown RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 LINC00471Q8N535 108 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 SLC5A11Q8WWX8 675 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 THRSPQ92748 146 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 DIO2Q92813 273 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 TMCO6Q96DC7 493 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 PRR11Q96HE9 360 aaPredicted RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 KATNBL1Q9H079 304 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 SMG9Q9H0W8 520 aaKnown RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 KAT8Q9H7Z6 458 aaKnown RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 KCNK13Q9HB14 408 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 CDH20Q9HBT6 801 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 GSKIPQ9P0R6 139 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 B4GALT6Q9UBX8 382 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 Q9Y3F1 56 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 PIAS3Q9Y6X2 628 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 CAMSAP1Q5T5Y3 1602 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 SPTA1P02549 2419 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 KANTRA0A1W2PQU2 76 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 CAPN8A6NHC0 703 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 KLRC4O43908 158 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 RNH1P13489 461 aaKnown RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 RBMXP38159 391 aaKnown RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 SMSP52788 366 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 CSTF1Q05048 431 aaKnown RBP6.97□□□□□ -1.29
UPF2-203ENST00000397053 NIPAL4Q0D2K0 466 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 TIGD6Q17RP2 521 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 ZNF542PQ5EBM4 170 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 RNF111Q6ZNA4 994 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 IRF2BP2Q7Z5L9 587 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 MARCH9Q86YJ5 346 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 TRAM1L1Q8N609 369 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 OR6N2Q8NGY6 317 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 OR8S1Q8NH09 359 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 COQ8AQ8NI60 647 aa6.97□□□□□ -1.29
UPF2-203ENST00000397053 AGAP11Q8TF27 550 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms