RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 KIF2BQ8N4N8 673 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 Q8N9G6 341 aaPredicted RBP13.09□□□□□ -0.31
VAPB-202ENST00000395802 GLB1L3Q8NCI6 653 aaPredicted RBP13.09□□□□□ -0.31
VAPB-202ENST00000395802 WDR48Q8TAF3 677 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 CHTF18Q8WVB6 975 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 TCEAL3Q969E4 200 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 TRAPPC9Q96Q05 1148 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 ZBTB18Q99592 522 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 CCDC3Q9BQI4 270 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 C1orf50Q9BV19 199 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 ROGDIQ9GZN7 287 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 PDE7BQ9NP56 450 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 TMEM9BQ9NQ34 198 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 TAGLN3Q9UI15 199 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 ADAM29Q9UKF5 820 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 G3BP2Q9UN86 482 aaKnown RBP13.09□□□□□ -0.31
VAPB-202ENST00000395802 GPR45Q9Y5Y3 372 aa13.09□□□□□ -0.31
VAPB-202ENST00000395802 HEATR5BQ9P2D3 2071 aa13.08□□□□□ -0.31
VAPB-202ENST00000395802 B4GAT1O43505 415 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 SLC22A3O75751 556 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 CPNE6O95741 557 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 LDOC1O95751 146 aaPredicted RBP13.08□□□□□ -0.32
VAPB-202ENST00000395802 C9P02748 559 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 GP1BAP07359 652 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 ALDOCP09972 364 aaKnown RBP13.08□□□□□ -0.32
VAPB-202ENST00000395802 ESRRAP11474 423 aaPredicted RBP13.08□□□□□ -0.32
VAPB-202ENST00000395802 CKMT2P17540 419 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 DDX5P17844 614 aaKnown RBP13.08□□□□□ -0.32
VAPB-202ENST00000395802 PTPN4P29074 926 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 ASMTP46597 345 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 KCNJ2P63252 427 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 CYP4F2P78329 520 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 KLF10Q13118 480 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 STX5Q13190 355 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 HERC3Q15034 1050 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 CSRP2Q16527 193 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 NOXRED1Q6NXP6 359 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 FBXO42Q6P3S6 717 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 TMEM71Q6P5X7 295 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 TRIM40Q6P9F5 258 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 FAM92BQ6ZTR7 304 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 METTL4Q8N3J2 472 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 PRSS33Q8NF86 280 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 OR2I1PQ8NGU4 316 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 RHBDD1Q8TEB9 315 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 CREB3L4Q8TEY5 395 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 TSPEARQ8WU66 669 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 APIPQ96GX9 242 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 KCNC2Q96PR1 638 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 OR2A5Q96R48 311 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 MAP3K3Q99759 626 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 OR51B5Q9H339 312 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 SEMA4GQ9NTN9 838 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 PILRAQ9UKJ1 303 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 KLHL20Q9Y2M5 609 aa13.08□□□□□ -0.32
VAPB-202ENST00000395802 MN1Q10571 1320 aaPredicted RBP13.08□□□□□ -0.32
VAPB-202ENST00000395802 ARID1BQ8NFD5 2236 aaPredicted RBP13.08□□□□□ -0.32
VAPB-202ENST00000395802 ADAMTS9Q9P2N4 1935 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 A0A0J9YVX5 310 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 GNG14A0A1W2PPG7 69 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 LRIT2A6NDA9 550 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 SLC9B1P1A6NJY1 282 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 PRMT3O60678 531 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 G6PDP11413 515 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 ST6GAL1P15907 406 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 CD1CP29017 333 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 NBL1P41271 181 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 CLNS1AP54105 237 aaKnown RBP13.07□□□□□ -0.32
VAPB-202ENST00000395802 DIO3P55073 304 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 SKP1P63208 163 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 CYP4F3Q08477 520 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 TBL3Q12788 808 aaKnown RBP13.07□□□□□ -0.32
VAPB-202ENST00000395802 CYLC2Q14093 348 aaPredicted RBP13.07□□□□□ -0.32
VAPB-202ENST00000395802 ZIC1Q15915 447 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 TMTC4Q5T4D3 741 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 NKAIN2Q5VXU1 208 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 NIPAL1Q6NVV3 410 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 GUSBP11Q6P575 273 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 CYP20A1Q6UW02 462 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 VN1R5Q7Z5H4 357 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 NUDT13Q86X67 352 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 PLD3Q8IV08 490 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 C1orf52Q8N6N3 182 aaKnown RBP13.07□□□□□ -0.32
VAPB-202ENST00000395802 IFI44Q8TCB0 444 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 NT5CQ8TCD5 201 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 N4BP2L2Q92802 583 aaPredicted RBP13.07□□□□□ -0.32
VAPB-202ENST00000395802 FCRL1Q96LA6 429 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 SLC25A23Q9BV35 468 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 MRPL1Q9BYD6 325 aaKnown RBP13.07□□□□□ -0.32
VAPB-202ENST00000395802 SOHLH2Q9NX45 425 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 FTSJ1Q9UET6 329 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 GIMAP2Q9UG22 337 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 MCM8Q9UJA3 840 aa13.07□□□□□ -0.32
VAPB-202ENST00000395802 POLR3HQ9Y535 204 aaPredicted RBP13.07□□□□□ -0.32
VAPB-202ENST00000395802 PCDH7O60245 1069 aa13.06□□□□□ -0.32
VAPB-202ENST00000395802 ETHE1O95571 254 aa13.06□□□□□ -0.32
VAPB-202ENST00000395802 BCKDHAP12694 445 aa13.06□□□□□ -0.32
VAPB-202ENST00000395802 NQO1P15559 274 aaKnown RBP13.06□□□□□ -0.32
VAPB-202ENST00000395802 JAK1P23458 1154 aa13.06□□□□□ -0.32
VAPB-202ENST00000395802 PIK3R1P27986 724 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms