RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SLC4A1P02730 911 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ERP29P30040 261 aaKnown RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 PRDX3P30048 256 aaKnown RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 HLA-FP30511 346 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 GRK5P34947 590 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 CYP4F3Q08477 520 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ELP6Q0PNE2 266 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 KIAA0040Q15053 153 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 FBXO43Q4G163 708 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 MLIPQ5VWP3 458 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 RNF219Q5W0B1 726 aaPredicted RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 PARM1Q6UWI2 310 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SNX20Q7Z614 316 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SYVN1Q86TM6 617 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 C12orf40Q86WS4 652 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SFTPA1Q8IWL2 248 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SMRP1Q8NCR6 262 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ZFAND1Q8TCF1 268 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ALG14Q96F25 216 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SLC30A2Q9BRI3 323 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SPON2Q9BUD6 331 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 PDFQ9HBH1 243 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 C14orf119Q9NWQ9 140 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 MARCH4Q9P2E8 410 aaPredicted RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 LSM7Q9UK45 103 aaKnown RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 OR51B4Q9Y5P0 310 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 TEX51A0A1B0GUA7 166 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 LOC285095A0A1B0GVY8 99 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 HEPACAM2A8MVW5 462 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 K7ERQ8 282 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 CD3EAPO15446 510 aaKnown RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 LDB2O43679 373 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ZNF780AO75290 641 aaPredicted RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 CLDN11O75508 207 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SLITRK5O94991 958 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 DNTTP04053 509 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 CYP4B1P13584 511 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SOX6P35712 828 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 CSKP41240 450 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ARSDP51689 593 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ARHGDIAP52565 204 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ARF5P84085 180 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 RAD51Q06609 339 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SLAMF1Q13291 335 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ESCO2Q56NI9 601 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 KIAA1614Q5VZ46 1190 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 CYP20A1Q6UW02 462 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 VITQ6UXI7 678 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 PLCZ1Q86YW0 608 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 CCDC71Q8IV32 467 aaPredicted RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 TCAIMQ8N3R3 496 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 TEX26Q8N6G2 289 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 SMARCD2Q92925 531 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 PYURFQ96I23 114 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 FYTTD1Q96QD9 318 aaKnown RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 ACOX2Q99424 681 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 PITX2Q99697 317 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 KXD1Q9BQD3 176 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 THUMPD3Q9BV44 507 aaKnown RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 ROGDIQ9GZN7 287 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 RANGRFQ9HD47 186 aaPredicted RBP10.75□□□□□ -0.69
CUX1-204ENST00000393824 PLCXD1Q9NUJ7 323 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ERVK13-1Q9NX77 482 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 VNN3Q9NY84 501 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 KLK4Q9Y5K2 254 aa10.75□□□□□ -0.69
CUX1-204ENST00000393824 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.74□□□□□ -0.69
CUX1-204ENST00000393824 A0A1W2PPC1 479 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 A0A1W2PQ72 361 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 C12orf71A8MTZ7 269 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 CBX4O00257 560 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 CTDSP2O14595 271 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 PCDHGA12O60330 932 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 KCNJ13O60928 360 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 LATS1O95835 1130 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 POU3F3P20264 500 aaPredicted RBP10.74□□□□□ -0.69
CUX1-204ENST00000393824 WEE1P30291 646 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 CA5AP35218 305 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 CTSOP43234 321 aaPredicted RBP10.74□□□□□ -0.69
CUX1-204ENST00000393824 RGRP47804 291 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 MAPKAPK2P49137 400 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 DGKQP52824 942 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 B2MP61769 119 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 LMAN2Q12907 356 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 ZNF177Q13360 481 aaPredicted RBP10.74□□□□□ -0.69
CUX1-204ENST00000393824 TOR1AIP1Q5JTV8 583 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 MARC1Q5VT66 337 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 TMEM215Q68D42 235 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 KDELC2Q7Z4H8 507 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 LDB1Q86U70 411 aaPredicted RBP10.74□□□□□ -0.69
CUX1-204ENST00000393824 CPXM2Q8N436 756 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 CELF5Q8N6W0 485 aaKnown RBP10.74□□□□□ -0.69
CUX1-204ENST00000393824 HJURPQ8NCD3 748 aaPredicted RBP10.74□□□□□ -0.69
CUX1-204ENST00000393824 OR56A4Q8NGH8 313 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 APH1BQ8WW43 257 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 GTF2H4Q92759 462 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 SNAPC3Q92966 411 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 IRF7Q92985 503 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 CHFRQ96EP1 664 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 EXOC2Q96KP1 924 aa10.74□□□□□ -0.69
CUX1-204ENST00000393824 GUCD1Q96NT3 240 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms