RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 REXO4Q9GZR2 422 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CHRDQ9H2X0 955 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 RERGLQ9H628 205 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 LIN28AQ9H9Z2 209 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 UCKL1Q9NWZ5 548 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 STOML2Q9UJZ1 356 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 FAM32AQ9Y421 112 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 MAP4K5Q9Y4K4 846 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CEPT1Q9Y6K0 416 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CKAP5Q14008 2032 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 TMEM150CB9EJG8 249 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PSMD11O00231 422 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 LDOC1O95751 146 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 ZNF23P17027 643 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 IFNA8P32881 189 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SUOXP51687 545 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 DGKQP52824 942 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SLC9B1Q4ZJI4 515 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FAM219BQ5XKK7 198 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PAOXQ6QHF9 649 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 LIX1Q8N485 282 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PPP3R2Q96LZ3 170 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 QRFPRQ96P65 431 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 ELF4Q99607 663 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 DCUN1D5Q9BTE7 237 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 DERL2Q9GZP9 239 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PAIP1Q9H074 479 aaKnown RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FAIMQ9NVQ4 179 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CUEDC1Q9NWM3 386 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 DHCR7Q9UBM7 475 aaKnown RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FZD4Q9ULV1 537 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FAM221BA6H8Z2 402 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SLCO1B7G3V0H7 640 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CLDN4O14493 209 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 H6PDO95479 791 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 NELFEP18615 380 aaKnown RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 HPCAL1P37235 193 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PSMD7P51665 324 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 GAS6Q14393 721 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 GPAT3Q53EU6 434 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FAM83HQ6ZRV2 1179 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SYNPOQ8N3V7 929 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 DDHD1Q8NEL9 900 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 OR8K5Q8NH50 307 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SLC45A3Q96JT2 553 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 MAP3K3Q99759 626 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 RBM38Q9H0Z9 239 aaKnown RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SEMA6AQ9H2E6 1030 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 RMND5AQ9H871 391 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 TRPV4Q9HBA0 871 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CTPS2Q9NRF8 586 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FARSBQ9NSD9 589 aaKnown RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PNPLA3Q9NST1 481 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 GID8Q9NWU2 228 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CDV3Q9UKY7 258 aaKnown RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 WDR37Q9Y2I8 494 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SNX13Q9Y5W8 968 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CCNDBP1O95273 360 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 ARNTP27540 789 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 ITPKBP27987 946 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 OR1D4P47884 311 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 NAA20P61599 178 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 RPE65Q16518 533 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FIGLAQ6QHK4 219 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 EPGNQ6UW88 154 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PGAM4Q8N0Y7 254 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CBARPQ8N350 705 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 TCAIMQ8N3R3 496 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 DEFB124Q8NES8 71 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 OR4K1Q8NGD4 311 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FAM110BQ8TC76 370 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 VPS50Q96JG6 964 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CNDP1Q96KN2 507 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CNDP2Q96KP4 475 aaKnown RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SORT1Q99523 831 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 KCNH6Q9H252 994 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 EGFL7Q9UHF1 273 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 AP4S1Q9Y587 144 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 RNF215Q9Y6U7 377 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SPTBN1Q01082 2364 aaKnown RBP9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SH3PXD2BA1X283 911 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 C9J4A7 227 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 RFXANKO14593 260 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PCDH7O60245 1069 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 MATN4O95460 622 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PRKAR1AP10644 381 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 OTX2P32243 289 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SLC19A1P41440 591 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PPP1R3AQ16821 1122 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 AFMIDQ63HM1 303 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 MAVSQ7Z434 540 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PLXDC1Q8IUK5 500 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 FAM47BQ8NA70 645 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 PEX11GQ96HA9 241 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 NSMCE3Q96MG7 304 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 TRIB3Q96RU7 358 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 RANBP9Q96S59 729 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 TRIM8Q9BZR9 551 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CD244Q9BZW8 370 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 SNX7Q9UNH6 387 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms