RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 ADARB1P78563 741 aaKnown RBP13.79□□□□□ -0.2
RTF1-201ENST00000389629 HSPB3Q12988 150 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 SEMA3AQ14563 771 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 UPP1Q16831 310 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 PROX2Q3B8N5 592 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 CRB2Q5IJ48 1285 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 LYSMD2Q8IV50 215 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 NPLOC4Q8TAT6 608 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 SLC35A5Q9BS91 424 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 CCDC32Q9BV29 185 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 FARSBQ9NSD9 589 aaKnown RBP13.79□□□□□ -0.2
RTF1-201ENST00000389629 VPS29Q9UBQ0 182 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 SPO11Q9Y5K1 396 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 TGFBR1P36897 503 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 RHAGQ02094 409 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 ANKRD34AQ69YU3 496 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 ZNF367Q7RTV3 350 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 C1orf52Q8N6N3 182 aaKnown RBP13.79□□□□□ -0.2
RTF1-201ENST00000389629 PEX13Q92968 403 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 PPIEQ9UNP9 301 aaKnown RBP13.79□□□□□ -0.2
RTF1-201ENST00000389629 NME7Q9Y5B8 376 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 MYO10Q9HD67 2058 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 CLCA1A8K7I4 914 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 CLDN7O95471 211 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 FSHRP23945 695 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 RPL3P39023 403 aaKnown RBP13.79□□□□□ -0.2
RTF1-201ENST00000389629 MTAPQ13126 283 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 EXOC3L2Q2M3D2 409 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 PTCHD3Q3KNS1 767 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 LRRTM3Q86VH5 581 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 NT5C3BQ969T7 300 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 EXOSC8Q96B26 276 aaKnown RBP13.79□□□□□ -0.2
RTF1-201ENST00000389629 TMEM80Q96HE8 168 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 CTRCQ99895 268 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 INPP5KQ9BT40 448 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 PDCD10Q9BUL8 212 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 EQTNQ9NQ60 294 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 MBD2Q9UBB5 411 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 HCN2Q9UL51 889 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 H3BM21 787 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 CH25HO95992 272 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 STOMP27105 288 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 SPHARQ15513 63 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 CCL14Q16627 93 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 OR4K1Q8NGD4 311 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 NUDT8Q8WV74 236 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 SLA2Q9H6Q3 261 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 HCN4Q9Y3Q4 1203 aa13.79□□□□□ -0.2
RTF1-201ENST00000389629 LOXHD1Q8IVV2 1947 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 A0A1W2PQ09 198 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 MTX2O75431 263 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 CYP2A6P11509 494 aaPredicted RBP13.78□□□□□ -0.2
RTF1-201ENST00000389629 AFF1P51825 1210 aaKnown RBP13.78□□□□□ -0.2
RTF1-201ENST00000389629 KIAA0319Q5VV43 1072 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 DHRS4L2Q6PKH6 230 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 SMARCD3Q6STE5 483 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 AGMOQ6ZNB7 445 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 SLC5A8Q8N695 610 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 FAM86B1Q8N7N1 296 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 ABCD2Q9UBJ2 740 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 SHANK3Q9BYB0 1731 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 KPNA3O00505 521 aaPredicted RBP13.78□□□□□ -0.2
RTF1-201ENST00000389629 CHST10O43529 356 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 FCGRTP55899 365 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 ZXDBP98169 803 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 PPIGQ13427 754 aaKnown RBP eCLIP13.78□□□□□ -0.22e-6■□□□□ 8.3
RTF1-201ENST00000389629 MARCH8Q5T0T0 291 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 RAET1EQ8TD07 263 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 MAL2Q969L2 176 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 SLC29A3Q9BZD2 475 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 ZNF282Q9UDV7 671 aaPredicted RBP13.78□□□□□ -0.2
RTF1-201ENST00000389629 A0A1W2PQL4 384 aaPredicted RBP13.78□□□□□ -0.2
RTF1-201ENST00000389629 ICMTO60725 284 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 PDYNP01213 254 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 RPL17P18621 184 aaKnown RBP13.78□□□□□ -0.2
RTF1-201ENST00000389629 AQP6Q13520 282 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 FGFBP1Q14512 234 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 GARNL3Q5VVW2 1013 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 ZFP41Q8N8Y5 198 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 GPR151Q8TDV0 419 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 SMIM14Q96QK8 99 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 TUBB1Q9H4B7 451 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 HSPE1-MOB4S4R3N1 261 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 GABARAPO95166 117 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 URODP06132 367 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 CDK6Q00534 326 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 KLHL22Q53GT1 634 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 UBXN11Q5T124 520 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 TMEM207Q6UWW9 146 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 PIAS4Q8N2W9 510 aaPredicted RBP13.78□□□□□ -0.2
RTF1-201ENST00000389629 UBE2FQ969M7 185 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 MAPKAP1Q9BPZ7 522 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 PAK6Q9NQU5 681 aaPredicted RBP13.78□□□□□ -0.2
RTF1-201ENST00000389629 SARDHQ9UL12 918 aa13.78□□□□□ -0.2
RTF1-201ENST00000389629 TRAV19A0A0A6YYK7 116 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 WNT9AO14904 365 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 TNFSF8P32971 234 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 GMFBP60983 142 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 AP1S1P61966 158 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 SEMA3BQ13214 749 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms