RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 SLC39A13Q96H72 371 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 CCDC138Q96M89 665 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 SPAG5Q96R06 1193 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 PIGSQ96S52 555 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 PLA2G2FQ9BZM2 168 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 NXF3Q9H4D5 531 aaKnown RBP-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 THAP1Q9NVV9 213 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 BEX4Q9NWD9 120 aaPredicted RBP-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 SLC2A8Q9NY64 477 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 DACT1Q9NYF0 836 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 MYEF2Q9P2K5 600 aaKnown RBP-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 ZNF490Q9ULM2 529 aaPredicted RBP-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 PCDHGB2Q9Y5G2 931 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 ARHGAP32A7KAX9 2087 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 PHLDB1Q86UU1 1377 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 WDFY3Q8IZQ1 3526 aa-1.13□□□□□ -2.59
RNU6-540P-201ENST00000384622 A0A087WSZ3 146 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 LOC105371045A0A1W2PR82 267 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 FAM166BA8MTA8 275 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 A8MUU9 505 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 H3BML4 177 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 K7EP34 96 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 ZNF73O43830 326 aaPredicted RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 CLPXO76031 633 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 SLC16A8O95907 504 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 SLC2A4P14672 509 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TCF3P15923 654 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 CA4P22748 312 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 AKT1P31749 480 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 G6PCP35575 357 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TECP42680 631 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 RECQLP46063 649 aaPredicted RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 EMDP50402 254 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 P2RY4P51582 365 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 GPR143P51810 404 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 ZNF41P51814 821 aaPredicted RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 MNAT1P51948 309 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 NDST1P52848 882 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 MVDP53602 400 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 YWHAZP63104 245 aaKnown RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 VLDLRP98155 873 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 DPYSL3Q14195 570 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 HERPUD1Q15011 391 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 DEFB112Q30KQ8 113 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 PLPPR5Q32ZL2 321 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TBRG1Q3YBR2 411 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 ABCA11PQ4W5N1 156 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 RUNDC3AQ59EK9 446 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TSPO2Q5TGU0 170 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 GARNL3Q5VVW2 1013 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 INO80CQ6PI98 192 aaPredicted RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 APOA5Q6Q788 366 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 PARGQ86W56 976 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TMEM25Q86YD3 366 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 UNC5CLQ8IV45 518 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 GCNT2Q8N0V5 402 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 MTURNQ8N3F0 131 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 OR5T2Q8NGG2 359 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 ATL2Q8NHH9 583 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TTC8Q8TAM2 541 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 DIS3LQ8TF46 1054 aaKnown RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TRIM44Q96DX7 344 aaPredicted RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 IQCDQ96DY2 449 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TVP23CQ96ET8 276 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 MSLNLQ96KJ4 702 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 GUCD1Q96NT3 240 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 PCDHB18PQ96TA0 734 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 PRRT1Q99946 306 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 ZNF251Q9BRH9 671 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 SHANK2-AS3Q9BTD1 123 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 NUF2Q9BZD4 464 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 NMUR2Q9GZQ4 415 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 ALKBH4Q9NXW9 302 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 SLC5A4Q9NY91 659 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 PDP1Q9P0J1 537 aaPredicted RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 ITGA11Q9UKX5 1188 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 CARD8Q9Y2G2 431 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 PRG3Q9Y2Y8 225 aaPredicted RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 LSM4Q9Y4Z0 139 aaKnown RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 CACNG2Q9Y698 323 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 DYNC1LI1Q9Y6G9 523 aaKnown RBP-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 TONSLQ96HA7 1378 aa-1.14□□□□□ -2.59
RNU6-540P-201ENST00000384622 RBBP6Q7Z6E9 1792 aaKnown RBP-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 IGLV2-33A0A075B6J2 118 aaPredicted RBP-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 SPAARA0A1B0GVQ0 90 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 CLCA1A8K7I4 914 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 GFYI3L273 518 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 CLDN5O00501 218 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 ZNF207O43670 478 aaKnown RBP-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 FKBP6O75344 327 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 CDC45O75419 566 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 RCBTB2O95199 551 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 CLDN9O95484 217 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 IGKV1D-33P01593 117 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 IGKV1-33P01594 117 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 CD3DP04234 171 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 HSPB1P04792 205 aaKnown RBP-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 KRT8P05787 483 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 LYNX1P0DP58 116 aa-1.15□□□□□ -2.59
RNU6-540P-201ENST00000384622 RRASP10301 218 aa-1.15□□□□□ -2.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms