RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 POLDIP3Q9BY77 421 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 OSBPL8Q9BZF1 889 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SEC61A2Q9H9S3 476 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FAM118AQ9NWS6 357 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TAS2R9Q9NYW1 312 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 METRNQ9UJH8 293 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FBXW11Q9UKB1 542 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CLTCQ00610 1675 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 RNF212BA8MTL3 300 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 LGALS8O00214 317 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PF4V1P10720 104 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 LIPCP11150 499 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CAPN3P20807 821 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 KCNA3P22001 575 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 L1CAMP32004 1257 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 GLP1RP43220 463 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 KHKP50053 298 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 RAB9AP51151 201 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 RBL2Q08999 1139 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 NAE1Q13564 534 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SLC18A3Q16572 532 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 UPP1Q16831 310 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FAM209AQ5JX71 171 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 Q6ZVU0 165 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ASPGQ86U10 573 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SLC13A5Q86YT5 568 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 ZBTB2Q8N680 514 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 MINDY2Q8NBR6 621 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ACOT12Q8WYK0 555 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FKBP10Q96AY3 582 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SNF8Q96H20 258 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 WDR77Q9BQA1 342 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 FNDC11Q9BVV2 318 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TP63Q9H3D4 680 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 ELOVL3Q9HB03 270 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ABRACLQ9P1F3 81 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 KLHL9Q9P2J3 617 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PGAP2Q9UHJ9 254 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 IKZF2Q9UKS7 526 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CACNA1BQ00975 2339 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TARBP1Q13395 1621 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 SLIT2O94813 1529 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 A0A1W2PQ72 361 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ANKRD30BLA7E2S9 258 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CENPXA8MT69 81 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 C21orf140B9A014 251 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 J3QW42 95 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 MYO1CO00159 1063 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CASC3O15234 703 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 SNNO75324 88 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 KDM4BO94953 1096 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 IFNA6P05013 189 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ZNF806P0C7X5 589 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CRATP43155 626 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 WDR4P57081 412 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 PPP1CAP62136 330 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CD47Q08722 323 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ARL16Q0P5N6 197 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 DPYSL2Q16555 572 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PARP6Q2NL67 630 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 HLA-BQ31612 363 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FGD3Q5JSP0 725 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 BEND6Q5SZJ8 279 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 RGS7BPQ6MZT1 257 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 RPS19BP1Q86WX3 136 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 OFCC1Q8IZS5 231 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 OR8K3Q8NH51 312 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 STYXQ8WUJ0 223 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 OR5P2Q8WZ92 322 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 MTERF3Q96E29 417 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 LRR1Q96L50 414 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 C1orf74Q96LT6 269 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CAMK1GQ96NX5 476 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 MYADMQ96S97 322 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 AARSD1Q9BTE6 412 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 SOX17Q9H6I2 414 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 EFCAB1Q9HAE3 211 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ZNF334Q9HCZ1 680 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 IKZF3Q9UKT9 509 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 OSGIN2Q9Y236 505 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 IRAK3Q9Y616 596 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CTTNBP2Q8WZ74 1663 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 LCHNA4D1U4 455 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 NCF1BA6NI72 391 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 NCF1CA8MVU1 366 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 C2CD4DB7Z1M9 353 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 TNFRSF10CO14798 259 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 GZMAP12544 262 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 NCF1P14598 390 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 EPHA8P29322 1005 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 BRS3P32247 399 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 RYKP34925 604 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 RPS9P46781 194 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 GPR143P51810 404 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 RPA4Q13156 261 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ZNF267Q14586 743 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 AGAP6Q5VW22 663 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 CST9Q5W186 159 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ABHD15Q6UXT9 468 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms