RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SZRD1Q7Z422 152 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 LYSMD2Q8IV50 215 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 OR8H2Q8N162 312 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 OR52E4Q8NGH9 312 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 SCRN2Q96FV2 425 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 CEP19Q96LK0 163 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 ACAT2Q9BWD1 397 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 OR51B5Q9H339 312 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 ERVK13-1Q9NX77 482 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 ASIC5Q9NY37 505 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 PCDHGB3Q9Y5G1 929 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 PCDHGB1Q9Y5G3 927 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 A0A1W2PRU2 124 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 ARHGEF33A8MVX0 844 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SCN2BO60939 215 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SLC16A8O95907 504 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 C1SP09871 688 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 AZGP1P25311 298 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 CHI3L1P36222 383 aaPredicted RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 CRYBA2P53672 197 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 ITGA1P56199 1179 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SMU1Q2TAY7 513 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 DESI1Q6ICB0 168 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 AGTRAPQ6RW13 159 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 FAM9CQ8IZT9 166 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 C11orf65Q8NCR3 313 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 DNAJB8Q8NHS0 232 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 RAET1EQ8TD07 263 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 PHF10Q8WUB8 498 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 TMEM169Q96HH4 297 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 BTBD2Q9BX70 525 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF556Q9HAH1 456 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 FBXO8Q9NRD0 319 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 QPCTLQ9NXS2 382 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 WDR37Q9Y2I8 494 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SMIM30A4D0T7 59 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 A8MV72 311 aaPredicted RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 PCDH17O14917 1159 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 TSPAN6O43657 245 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SSX4O60224 188 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 PABPC1P11940 636 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 RPS26P62854 115 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 AGAP7PQ5VUJ5 663 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 ERICH5Q6P6B1 374 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 FAM124AQ86V42 546 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 NPAS3Q8IXF0 933 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 TAGAPQ8N103 731 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 HUS1BQ8NHY5 278 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 C7orf34Q96L11 122 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 OR5M11Q96RB7 305 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 CCM2Q9BSQ5 444 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 C11orf16Q9NQ32 467 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 RUVBL1Q9Y265 456 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 FAM32AQ9Y421 112 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 RFPL2O75678 378 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 UPK1BO75841 260 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SOX14O95416 240 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 CKMT1AP12532 417 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 PDHA2P29803 388 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 GRK3P35626 688 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 EIF2DP41214 584 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SLC6A12P48065 614 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 HBA1P69905 142 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SF3B4Q15427 424 aaKnown RBP eCLIP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF385BQ569K4 471 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 ATAD3BQ5T9A4 648 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 HMGN2P46Q86SG4 172 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 MMP21Q8N119 569 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 ELMOD1Q8N336 334 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 AMER2Q8N7J2 671 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 FBLIM1Q8WUP2 373 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 MYDGFQ969H8 173 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 TMEM159Q96B96 161 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 PKP4Q99569 1192 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 SLC35A5Q9BS91 424 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 DOHHQ9BU89 302 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 RIOK2Q9BVS4 552 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 MRPL17Q9NRX2 175 aaKnown RBP11.68□□□□□ -0.54
CLIP3-201ENST00000360535 NDUFAF4Q9P032 175 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 OSGIN1Q9UJX0 560 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 TMED5Q9Y3A6 229 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 LYVE1Q9Y5Y7 322 aa11.68□□□□□ -0.54
CLIP3-201ENST00000360535 NEDD8-MDP1E9PL57 170 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CTDSP2O14595 271 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 HOXB9P17482 250 aaPredicted RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 XPAP23025 273 aaPredicted RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 HLA-FP30511 346 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 SPINT3P49223 89 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CTSCP53634 463 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CXCR4P61073 352 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 TSTQ16762 297 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 LEXMQ3ZCV2 418 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 KLHL17Q6TDP4 642 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 HSD11B1LQ7Z5J1 315 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 AKAP14Q86UN6 197 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 LSRQ86X29 649 aaPredicted RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 L3MBTL4Q8NA19 623 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CYB5D2Q8WUJ1 264 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms