RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 KLF8O95600 359 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 GSNP06396 782 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 IGFBP5P24593 272 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 GNPDA1P46926 289 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 TMED10P49755 219 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 DCDC1P59894 354 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 NCS1P62166 190 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 RPS14P62263 151 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 IL18R1Q13478 541 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 DGCR6Q14129 220 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 GBX1Q14549 363 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 NPTX1Q15818 432 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 INAQ16352 499 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ZC3H12BQ5HYM0 836 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 TMEM236Q5W0B7 351 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 MBOAT1Q6ZNC8 495 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 CEP68Q76N32 757 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 CALHM3Q86XJ0 350 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 HIPK1Q86Z02 1210 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 GLB1L3Q8NCI6 653 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 BTN2A2Q8WVV5 523 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 S100ZQ8WXG8 99 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 YIPF6Q96EC8 236 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 PYURFQ96I23 114 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 REXO5Q96IC2 774 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ZNF300Q96RE9 604 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 GAS2L1Q99501 681 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 BTBD2Q9BX70 525 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 LGR4Q9BXB1 951 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 HDAC8Q9BY41 377 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 DUSP21Q9H596 190 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 SERHLQ9NQF3 203 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 NECTIN3Q9NQS3 549 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 FBXO8Q9NRD0 319 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 GIN1Q9NXP7 522 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ZNF490Q9ULM2 529 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 PCDHB1Q9Y5F3 818 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 HTR3EA5X5Y0 456 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 AQP9O43315 295 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 S100BP04271 92 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ITGAMP11215 1152 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 MYCLP1P12525 358 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ATP1B2P14415 290 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 IL9P15248 144 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 TGFBR1P36897 503 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 NSG1P42857 185 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 MASP1P48740 699 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 CLK3P49761 638 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 MAD2L1Q13257 205 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 SMAD4Q13485 552 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 SMN1Q16637 294 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 PGS1Q32NB8 556 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 RFX4Q33E94 735 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 INAVAQ3KP66 663 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 TMEM52BQ4KMG9 183 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 USP39Q53GS9 565 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 CACHD1Q5VU97 1274 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ATG9BQ674R7 924 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ERAP2Q6P179 960 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 SHQ1Q6PI26 577 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 CCDC81Q6ZN84 652 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 LINC00299Q6ZSB3 139 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ZNF551Q7Z340 670 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 TRIM46Q7Z4K8 759 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ANKRD46Q86W74 232 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 TRAM1L1Q8N609 369 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 DYNC2LI1Q8TCX1 351 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 MTFMTQ96DP5 389 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 GABRG3Q99928 467 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 LRTM1Q9HBL6 345 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 MBNL1Q9NR56 388 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 SACM1LQ9NTJ5 587 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 FAM8A1Q9UBU6 413 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ABCG2Q9UNQ0 655 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 FAM32AQ9Y421 112 aaKnown RBP8.29□□□□□ -1.08
TRIM55-204ENST00000353317 ORC6Q9Y5N6 252 aa8.29□□□□□ -1.08
TRIM55-204ENST00000353317 A0A1W2PPC1 479 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 FAM220BPB1ANY3 271 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 LOC730098B7Z3J9 87 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CNOT3O75175 753 aaKnown RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 C1QCP02747 245 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 BCKDHAP12694 445 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 JUNDP17535 347 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 AOAHP28039 575 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 EPHA2P29317 976 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 NTSR1P30989 418 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 HOXD12P35452 270 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 MAGEA2P43356 314 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 DAPP51397 102 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 IL1RL1Q01638 556 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 SLC14A1Q13336 389 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CLCA4Q14CN2 919 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 HIST2H2ACQ16777 129 aaPredicted RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 DGUOKQ16854 277 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 SYT6Q5T7P8 510 aaPredicted RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CAPN13Q6MZZ7 669 aaPredicted RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 Q6ZS52 159 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 DSG4Q86SJ6 1040 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 P2RY8Q86VZ1 359 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 ZDHHC21Q8IVQ6 265 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms