RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SUSD6Q92537 303 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 ABTB1Q969K4 478 aaPredicted RBP9.94□□□□□ -0.82
LIMA1-201ENST00000341247 HSPBAP1Q96EW2 488 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 AMBNQ9NP70 447 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 RAD18Q9NS91 495 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 PAK1IP1Q9NWT1 392 aaPredicted RBP9.94□□□□□ -0.82
LIMA1-201ENST00000341247 SIRT5Q9NXA8 310 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 IGLON5A6NGN9 336 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 TRIM64CA6NLI5 447 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 UGDHO60701 494 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 MAP2K4P45985 399 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 ISL1P61371 349 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 RPS26P62854 115 aaKnown RBP9.94□□□□□ -0.82
LIMA1-201ENST00000341247 CNTN1Q12860 1018 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 RGNQ15493 299 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 PRSS53Q2L4Q9 553 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 DPY19L1Q2PZI1 675 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 XAF1Q6GPH4 301 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 C11orf96Q7Z7L8 435 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 DNAJB8Q8NHS0 232 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 FGF13Q92913 245 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 TMEM106CQ9BVX2 250 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 MAGIXQ9H6Y5 334 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 CCDC177Q9NQR7 707 aaPredicted RBP9.94□□□□□ -0.82
LIMA1-201ENST00000341247 TAC3Q9UHF0 121 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 AP3M1Q9Y2T2 418 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 OR1A2Q9Y585 309 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 TRPM6Q9BX84 2022 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 GON4LQ3T8J9 2241 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PLXNA2O75051 1894 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SLC1A7O00341 560 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 MAGEB3O15480 346 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 LILRB5O75023 590 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 HPRP00739 348 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 TFPTP0C1Z6 253 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 C1GALT1C1LP0DN25 315 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PTGER1P34995 402 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 CHI3L1P36222 383 aaPredicted RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ANKDD1AQ495B1 522 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ARHGAP22Q7Z5H3 698 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ADCK2Q7Z695 626 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SLC5A11Q8WWX8 675 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 LRIG1Q96JA1 1093 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SLC35A5Q9BS91 424 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 REEP1Q9H902 201 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 THUMPD1Q9NXG2 353 aaKnown RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 GMPPBQ9Y5P6 360 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SNX5Q9Y5X3 404 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 TRIM64A6NGJ6 449 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SUV39H1O43463 412 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ABCB7O75027 752 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ANGPTL1O95841 491 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 HNRNPA1P09651 372 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 POU2F1P14859 743 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 FUT4P22083 530 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ITGB7P26010 798 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 RRM2P31350 389 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PRIM2P49643 509 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 CRYBA2P53672 197 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PNLIPRP1P54315 467 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 BIRC2Q13490 618 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 CAMK2GQ13555 558 aaPredicted RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 DCTN2Q13561 401 aaKnown RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ELAVL3Q14576 367 aaKnown RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 LAIR1Q6GTX8 287 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 GPR153Q6NV75 609 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SZRD1Q7Z422 152 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 RNF130Q86XS8 419 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ETFBKMTQ8IXQ9 262 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PIK3C3Q8NEB9 887 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 NFKBIDQ8NI38 313 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PPCDCQ96CD2 204 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ZCCHC2Q9C0B9 1178 aaKnown RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ABCG4Q9H172 646 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 DMRT3Q9NQL9 472 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 KRT84Q9NSB2 600 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 CUEDC1Q9NWM3 386 aaPredicted RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ERVK-18Q9QC07 812 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 RPS6KA6Q9UK32 745 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 COL4A3Q01955 1670 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 EDDM13A0A1B0GTR0 161 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 IL3P08700 152 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 P2RY2P41231 377 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ASMTP46597 345 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 CLK3P49761 638 aaKnown RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PLA2G16P53816 162 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF763Q0D2J5 394 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ELP6Q0PNE2 266 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 HIST2H2ACQ16777 129 aaPredicted RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SPIN4Q56A73 249 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 HIST2H2AA3Q6FI13 130 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SHQ1Q6PI26 577 aaKnown RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 RASGRP3Q8IV61 690 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 TTC29Q8NA56 475 aaPredicted RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PJA1Q8NG27 643 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ADAMTS16Q8TE57 1224 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ZFP90Q8TF47 636 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 C11orf24Q96F05 449 aaPredicted RBP9.93□□□□□ -0.82
LIMA1-201ENST00000341247 KCNC2Q96PR1 638 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms