RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 KCNC2Q96PR1 638 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 SERPINA3P01011 423 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 GLI3P10071 1580 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 P2RY2P41231 377 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 CBX5P45973 191 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 RASGEF1BQ0VAM2 473 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 TDGQ13569 410 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 CRB2Q5IJ48 1285 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 METTL21CQ5VZV1 264 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 KIAA1191Q96A73 305 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 ASPNQ9BXN1 380 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 CHST10O43529 356 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 AKAP8O43823 692 aaKnown RBP13.05□□□□□ -0.32
RFFL-201ENST00000315249 PTDSS1P48651 473 aaKnown RBP13.05□□□□□ -0.32
RFFL-201ENST00000315249 LCN1P1Q5VSP4 162 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 TDRPQ86YL5 185 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 IQCKQ8N0W5 287 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 AMER2Q8N7J2 671 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 FATE1Q969F0 183 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 HERPUD2Q9BSE4 406 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 OSBPL11Q9BXB4 747 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 TRIM2Q9C040 744 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 ZNF446Q9NWS9 450 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 MS4A12Q9NXJ0 267 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 UPB1Q9UBR1 384 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 IRAK3Q9Y616 596 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 SCELO95171 688 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 EID2Q8N6I1 236 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 DAZLQ92904 295 aaKnown RBP13.05□□□□□ -0.32
RFFL-201ENST00000315249 PNPLA2Q96AD5 504 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 LYARQ9NX58 379 aaKnown RBP13.05□□□□□ -0.32
RFFL-201ENST00000315249 H3BSH0 61 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 CHN2P52757 468 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 CAPZA1P52907 286 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 PDK3Q15120 406 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 TMEM31Q5JXX7 168 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 RAET1LQ5VY80 246 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 MRPL38Q96DV4 380 aaKnown RBP13.04□□□□□ -0.32
RFFL-201ENST00000315249 CRELD1Q96HD1 420 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 DHRS1Q96LJ7 313 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 GPR22Q99680 433 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 APOOQ9BUR5 198 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 RETREG1Q9H6L5 497 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 B4GALT7Q9UBV7 327 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 LINC01553A4QN01 128 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 FAM159BA6NKW6 160 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 SOX1O00570 391 aaPredicted RBP13.04□□□□□ -0.32
RFFL-201ENST00000315249 ZNF3P17036 446 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 BPIP17213 487 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 FOLH1Q04609 750 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 RNF111Q6ZNA4 994 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 NATD1Q8N6N6 113 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 CCDC54Q8NEL0 328 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 KLHDC9Q8NEP7 349 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 OR1F2PQ96R84 312 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 THUMPD1Q9NXG2 353 aaKnown RBP13.04□□□□□ -0.32
RFFL-201ENST00000315249 TBX1O43435 398 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 OLR1P78380 273 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 RIPK1Q13546 671 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 ALG1LQ6GMV1 187 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 KRT74Q7RTS7 529 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 NLGN4YQ8NFZ3 816 aaPredicted RBP13.04□□□□□ -0.32
RFFL-201ENST00000315249 DSN1Q9H410 356 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 ZNF334Q9HCZ1 680 aaPredicted RBP13.04□□□□□ -0.32
RFFL-201ENST00000315249 TNFRSF4P43489 277 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 MTTPP55157 894 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 SELENOVP59797 346 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 LPCAT4Q643R3 524 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 ZBTB46Q86UZ6 589 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 LDOC1O95751 146 aaPredicted RBP13.04□□□□□ -0.32
RFFL-201ENST00000315249 DLG1Q12959 904 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 ZDHHC14Q8IZN3 488 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 KCNJ9Q92806 393 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 ZNF347Q96SE7 839 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 AGPSO00116 658 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 POLR1CO15160 346 aaPredicted RBP13.04□□□□□ -0.32
RFFL-201ENST00000315249 NOBOXO60393 691 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 C9P02748 559 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 EBLN1P0CF75 366 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 RPS15AP62244 130 aaKnown RBP13.04□□□□□ -0.32
RFFL-201ENST00000315249 EGFLAMQ63HQ2 1017 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 PQLC1Q8N2U9 271 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 OR56A1Q8NGH5 318 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 BORCS6Q96GS4 357 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 MUC13Q9H3R2 512 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 LGALS13Q9UHV8 139 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 WDR45Q9Y484 360 aa13.04□□□□□ -0.32
RFFL-201ENST00000315249 PLD2O14939 933 aa13.03□□□□□ -0.32
RFFL-201ENST00000315249 HOXB6P17509 224 aaKnown RBP13.03□□□□□ -0.32
RFFL-201ENST00000315249 SLC10A2Q12908 348 aaPredicted RBP13.03□□□□□ -0.32
RFFL-201ENST00000315249 NANOGNBQ7Z5D8 188 aa13.03□□□□□ -0.32
RFFL-201ENST00000315249 NRROSQ86YC3 692 aa13.03□□□□□ -0.32
RFFL-201ENST00000315249 AP3S1Q92572 193 aa13.03□□□□□ -0.32
RFFL-201ENST00000315249 ROPN1LQ96C74 230 aa13.03□□□□□ -0.32
RFFL-201ENST00000315249 CCNL2Q96S94 520 aaPredicted RBP13.03□□□□□ -0.32
RFFL-201ENST00000315249 CMKLR1Q99788 373 aa13.03□□□□□ -0.32
RFFL-201ENST00000315249 CRNNQ9UBG3 495 aaPredicted RBP13.03□□□□□ -0.32
RFFL-201ENST00000315249 CIB4A0PJX0 185 aa13.03□□□□□ -0.32
RFFL-201ENST00000315249 PCSK2P16519 638 aa13.03□□□□□ -0.32
RFFL-201ENST00000315249 TMED10P49755 219 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms