RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TOMM20Q15388 145 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 PRAMEF14Q5SWL7 426 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 PRAMEF13Q5VWM6 474 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 FAM129CQ86XR2 697 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 ARMC10Q8N2F6 343 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 L3HYPDHQ96EM0 354 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 IMP4Q96G21 291 aaKnown RBP12.45□□□□□ -0.42
COL3A1-201ENST00000304636 C1orf74Q96LT6 269 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 C12orf66Q96MD2 445 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 CCM2Q9BSQ5 444 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 ALG5Q9Y673 324 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 MED1Q15648 1581 aaPredicted RBP12.45□□□□□ -0.42
COL3A1-201ENST00000304636 CLDN4O14493 209 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 SORBS2O94875 1100 aaKnown RBP12.45□□□□□ -0.42
COL3A1-201ENST00000304636 MATN1P21941 496 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 SLC3A1Q07837 685 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 ELMOD2Q8IZ81 293 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 RFT1Q96AA3 541 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF597Q96LX8 424 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 MGLLQ99685 303 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 MYOCQ99972 504 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 ZSCAN5AQ9BUG6 496 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 OR2AG1Q9H205 316 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 TRPV4Q9HBA0 871 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 PLCL2Q9UPR0 1127 aa12.45□□□□□ -0.42
COL3A1-201ENST00000304636 C5orf51A6NDU8 294 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 FAM72CH0Y354 149 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 PIRO00625 290 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 NME4O00746 187 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 B3GALT2O43825 422 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 RLN2P04090 185 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 IGFALSP35858 605 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 DGKEP52429 567 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 FAM72AQ5TYM5 149 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 FAM72DQ6L9T8 149 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 FAM72BQ86X60 149 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 SPERTQ8NA61 448 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 GALNT6Q8NCL4 622 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 FBXO22Q8NEZ5 403 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 KXD1Q9BQD3 176 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF717Q9BY31 904 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 UBQLN2Q9UHD9 624 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 DNAJC15Q9Y5T4 150 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 A0A1B0GVG6 124 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 CENPBD1B2RD01 187 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 GRID2O43424 1007 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 CHP2O43745 196 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 C6orf47O95873 294 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 PSMD8P48556 350 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 CD97P48960 835 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF81P51508 661 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 LRRC66Q68CR7 880 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 POMZP3Q6PJE2 187 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 PRSS48Q7RTY5 328 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 RGL4Q8IZJ4 473 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 MAPK15Q8TD08 544 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TRIB3Q96RU7 358 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 MRPS30Q9NP92 439 aaKnown RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 PCDHGB5Q9Y5G0 923 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3DA0A087WVF3 549 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3IA0A087WXS9 549 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3EA0A087X179 549 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3KA0A087X1G2 549 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3FA6NER0 549 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3LB9A6J9 549 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 SEPT4O43236 478 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 OR2B3O76000 313 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3HP0C7X1 549 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TFPIP10646 304 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 KDELR2P33947 212 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 CLDN10P78369 228 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF267Q14586 743 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3GQ6DHY5 549 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3CQ6IPX1 549 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 GALNTL5Q7Z4T8 443 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TSPYL5Q86VY4 417 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 PAQR7Q86WK9 346 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 SNX29P2Q8IUI4 249 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TBC1D3Q8IZP1 549 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 CLDN19Q8N6F1 224 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF676Q8N7Q3 588 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 GPR151Q8TDV0 419 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 RBM18Q96H35 190 aaKnown RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 TTYH2Q9BSA4 534 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 RBM7Q9Y580 266 aaKnown RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 LRRN3E7EW58 273 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 GATBO75879 557 aaKnown RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 RENP00797 406 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 EPCAMP16422 314 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 GM2AP17900 193 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 APLP1P51693 650 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 PSMA6P60900 246 aaKnown RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 CREB5Q02930 508 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 AMZ2Q86W34 360 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 AMIGO1Q86WK6 493 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 RNF130Q86XS8 419 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 LCN9Q8WX39 176 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 OSTF1Q92882 214 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 YIPF4Q9BSR8 244 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 MIR1-1HGQ9H1L0 117 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms