RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 WDR48Q8TAF3 677 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 CERS4Q9HA82 394 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 MYNNQ9NPC7 610 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 CHD9Q3L8U1 2897 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 LOC100130705A0A1B0GUX0 176 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 FKBP9O95302 570 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 CPNE6O95741 557 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 ABCB1P08183 1280 aaPredicted RBP23.01■■□□□ 1.27
TRIM54-201ENST00000296098 NUDT7P0C024 238 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 CRHBPP24387 322 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 PCGF2P35227 344 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 RPL3P39023 403 aaKnown RBP23.01■■□□□ 1.27
TRIM54-201ENST00000296098 ARHGDIAP52565 204 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 VLDLRP98155 873 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 RUNX3Q13761 415 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 NEDD8Q15843 81 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 EGFLAMQ63HQ2 1017 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 HORMAD1Q86X24 394 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 METTL4Q8N3J2 472 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 LIN28AQ9H9Z2 209 aaKnown RBP23.01■■□□□ 1.27
TRIM54-201ENST00000296098 EBF1Q9UH73 591 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 HCN2Q9UL51 889 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 MYO1GB0I1T2 1018 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 FURINP09958 794 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 ITGAMP11215 1152 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 GJA4P35212 333 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 CDK3Q00526 305 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 PDE7AQ13946 482 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 DDX59Q5T1V6 619 aaKnown RBP eCLIP23.01■■□□□ 1.27
TRIM54-201ENST00000296098 LRRTM4Q86VH4 590 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 OR4K1Q8NGD4 311 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 GOT1L1Q8NHS2 421 aaPredicted RBP23.01■■□□□ 1.27
TRIM54-201ENST00000296098 C16orf78Q8WTQ4 265 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 PPCDCQ96CD2 204 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 TIMMDC1Q9NPL8 285 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 TDRKHQ9Y2W6 561 aaKnown RBP23.01■■□□□ 1.27
TRIM54-201ENST00000296098 TSC22D4Q9Y3Q8 395 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 AP1M2Q9Y6Q5 423 aa23.01■■□□□ 1.27
TRIM54-201ENST00000296098 KAT7O95251 611 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 NTRK1P04629 796 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 IL18R1Q13478 541 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 C6orf141Q5SZD1 244 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 ZNF691Q5VV52 312 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 CEP68Q76N32 757 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 CACUL1Q86Y37 369 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 ZNF740Q8NDX6 193 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 ZNF420Q8TAQ5 688 aaPredicted RBP23■■□□□ 1.27
TRIM54-201ENST00000296098 TFGQ92734 400 aaPredicted RBP23■■□□□ 1.27
TRIM54-201ENST00000296098 TUBA1CQ9BQE3 449 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 SLC23A2Q9UGH3 650 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 CDC14AQ9UNH5 594 aa23■■□□□ 1.27
TRIM54-201ENST00000296098 FAF1Q9UNN5 650 aaPredicted RBP23■■□□□ 1.27
TRIM54-201ENST00000296098 IGLON5A6NGN9 336 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 SLC16A6O15403 523 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 FPR1P21462 350 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 DNAJA1P31689 397 aaKnown RBP22.99■■□□□ 1.27
TRIM54-201ENST00000296098 DRD3P35462 400 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 ITGA1P56199 1179 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 CTBSQ01459 385 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 CD47Q08722 323 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 CAMK2GQ13555 558 aaPredicted RBP22.99■■□□□ 1.27
TRIM54-201ENST00000296098 CYP2A13Q16696 494 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 MEP1AQ16819 746 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 CTU2Q2VPK5 515 aaKnown RBP22.99■■□□□ 1.27
TRIM54-201ENST00000296098 TMIGD1Q6UXZ0 262 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 KRT78Q8N1N4 520 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 C11orf65Q8NCR3 313 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 C12orf43Q96C57 262 aaKnown RBP22.99■■□□□ 1.27
TRIM54-201ENST00000296098 BLOC1S6Q9UL45 172 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 BCKDKO14874 412 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 ABCB7O75027 752 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 DCKP27707 260 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 POLR2IP36954 125 aaKnown RBP22.99■■□□□ 1.27
TRIM54-201ENST00000296098 GABARAPL2P60520 117 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 HBA1P69905 142 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 FCHO2Q0JRZ9 810 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 C2orf80Q0P641 193 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 TEAD4Q15561 434 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 FAM71E1Q6IPT2 247 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 ANGPTL8Q6UXH0 198 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 OXR1Q8N573 874 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 C2orf73Q8N5S3 287 aaPredicted RBP22.99■■□□□ 1.27
TRIM54-201ENST00000296098 MAL2Q969L2 176 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 TPD52L3Q96J77 140 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 BARD1Q99728 777 aaKnown RBP22.99■■□□□ 1.27
TRIM54-201ENST00000296098 ADPRHL2Q9NX46 363 aa22.99■■□□□ 1.27
TRIM54-201ENST00000296098 DIRAS1O95057 198 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 C6orf47O95873 294 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 RPN2P04844 631 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 KLK1P06870 262 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 TAS2R50P59544 299 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 MC1RQ01726 317 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 LAPTM4AQ15012 233 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 SKIV2LQ15477 1246 aaKnown RBP22.98■■□□□ 1.27
TRIM54-201ENST00000296098 PIWIL3Q7Z3Z3 882 aaKnown RBP22.98■■□□□ 1.27
TRIM54-201ENST00000296098 VN1R5Q7Z5H4 357 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 NAGSQ8N159 534 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 PIK3C3Q8NEB9 887 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 LGR4Q9BXB1 951 aa22.98■■□□□ 1.27
TRIM54-201ENST00000296098 DZANK1Q9NVP4 752 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms