RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 YIPF4Q9BSR8 244 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 CCM2LQ9NUG4 571 aaPredicted RBP12.38□□□□□ -0.43
PTCD1-201ENST00000292478 TMEM45AQ9NWC5 275 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 IFT52Q9Y366 437 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 AGXTP21549 392 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 ARSFP54793 590 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 CAMK1Q14012 370 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 DECR1Q16698 335 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 SWI5Q1ZZU3 235 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 SMU1Q2TAY7 513 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 SFT2D3Q587I9 215 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 MSANTD1Q6ZTZ1 278 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 OR6K6Q8NGW6 343 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 HMGB4Q8WW32 186 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 OSTF1Q92882 214 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 GLYATL1Q969I3 302 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 CD180Q99467 661 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 TUBA1CQ9BQE3 449 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 NDC1Q9BTX1 674 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 SDHAF3Q9NRP4 125 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 COMMD3Q9UBI1 195 aa12.38□□□□□ -0.43
PTCD1-201ENST00000292478 EXOSC1Q9Y3B2 195 aaKnown RBP12.38□□□□□ -0.43
PTCD1-201ENST00000292478 BAZ2AQ9UIF9 1905 aaKnown RBP12.38□□□□□ -0.43
PTCD1-201ENST00000292478 ZNF840PA6NDX5 716 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 RAB36O95755 333 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 PENKP01210 267 aaPredicted RBP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 PFKLP17858 780 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 LMAN2Q12907 356 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TRAM2Q15035 370 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 B3GNT9Q6UX72 402 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 SLC36A4Q6YBV0 504 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 OR10T2Q8NGX3 314 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TXLNGYQ9BZA5 131 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 OR51B5Q9H339 312 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 AASSQ9UDR5 926 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 CCDC85CA6NKD9 419 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ZNF670-ZNF695F2Z2N8 137 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TSPAN6O43657 245 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 DFNA5O60443 496 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 INMTO95050 263 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 S100A9P06702 114 aaKnown RBP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 IVDP26440 423 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 MPP2Q14168 576 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 MOGQ16653 247 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 PM20D1Q6GTS8 502 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 HCAR2Q8TDS4 363 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 HERC2P3Q9BVR0 1158 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ARHGAP39Q9C0H5 1083 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TOR3AQ9H497 397 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 PNO1Q9NRX1 252 aaKnown RBP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 DLGAP4Q9Y2H0 992 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 PRAMEF33A0A0G2JMD5 474 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TBX1O43435 398 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 PRAMEF10O60809 474 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 GJB5O95377 273 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ZNF865P0CJ78 1059 aaPredicted RBP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 HOXB2P14652 356 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 CASP9P55211 416 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 PUM1Q14671 1186 aaKnown RBP eCLIP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 UBXN2BQ14CS0 331 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 INAVAQ3KP66 663 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 LDLRAD1Q5T700 205 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TCEAL6Q6IPX3 200 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 LINGO2Q7L985 606 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 SYVN1Q86TM6 617 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TMEM174Q8WUU8 243 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 MKLN1Q9UL63 735 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 GMFGO60234 142 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 HOXA11P31270 313 aaPredicted RBP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ZNF33BQ06732 778 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ITPRIPL2Q3MIP1 535 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 GPRIN1Q7Z2K8 1008 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 MARCH9Q86YJ5 346 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TREML1Q86YW5 311 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 L3HYPDHQ96EM0 354 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 IL4I1Q96RQ9 567 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 CTPS2Q9NRF8 586 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 RGS17Q9UGC6 210 aaPredicted RBP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ERVK-11Q9UQG0 969 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 CCDC88AQ3V6T2 1871 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 SCAMP1O15126 338 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 LINGO3P0C6S8 592 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 JUPP14923 745 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 AGTR2P50052 363 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ADAM8P78325 824 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 TXNL4AP83876 142 aaKnown RBP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 DSG2Q14126 1118 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ZNF676Q8N7Q3 588 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 CCDC107Q8WV48 283 aa12.37□□□□□ -0.43
PTCD1-201ENST00000292478 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.37□□□□□ -0.43
PTCD1-201ENST00000292478 B4DGG1 531 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 M0QZQ0 153 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 SEMA3DO95025 777 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 RASAL1O95294 804 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 MAP3K8P41279 467 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 GRIA2P42262 883 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 PTPRCAPQ14761 206 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 NCEH1Q6PIU2 408 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 Q6ZVL8 140 aa12.36□□□□□ -0.43
PTCD1-201ENST00000292478 PIGKQ92643 395 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms