RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 POLR3HQ9Y535 204 aaPredicted RBP12.68□□□□□ -0.38
SLIRP-201ENST00000238688 PCDHGA7Q9Y5G6 932 aa12.68□□□□□ -0.38
SLIRP-201ENST00000238688 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.68□□□□□ -0.38
SLIRP-201ENST00000238688 ARHGEF17Q96PE2 2063 aaPredicted RBP12.68□□□□□ -0.38
SLIRP-201ENST00000238688 PIPSLA2A3N6 862 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 PRAMEF4O60810 478 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 ERN1O75460 977 aaKnown RBP12.67□□□□□ -0.38
SLIRP-201ENST00000238688 FUCA1P04066 466 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 GIMD1P0DJR0 217 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 CD22P20273 847 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 CAPN3P20807 821 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 GCKP35557 465 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 GRK3P35626 688 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 AP2B1P63010 937 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 RELAQ04206 551 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 PRDX1Q06830 199 aaKnown RBP12.67□□□□□ -0.38
SLIRP-201ENST00000238688 MAP7Q14244 749 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 PRAMEF9Q5VWM5 478 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 NOXRED1Q6NXP6 359 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 TMIGD1Q6UXZ0 262 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 Q6ZSR6 202 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 IKBIPQ70UQ0 350 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 CAMKMTQ7Z624 323 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 TMEM126BQ8IUX1 230 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 EID2Q8N6I1 236 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 SPDYE1Q8NFV5 336 aaPredicted RBP12.67□□□□□ -0.38
SLIRP-201ENST00000238688 TNIP2Q8NFZ5 429 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 OR9I1Q8NGQ6 314 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 GPBAR1Q8TDU6 330 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 OR1E3Q8WZA6 343 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 SH3KBP1Q96B97 665 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 LRRC58Q96CX6 371 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 MTERF3Q96E29 417 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 ZNF764Q96H86 408 aaPredicted RBP12.67□□□□□ -0.38
SLIRP-201ENST00000238688 QRFPRQ96P65 431 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 CDRT15Q96T59 188 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 MYOCQ99972 504 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 C1orf50Q9BV19 199 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 TRIM15Q9C019 465 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 TWSG1Q9GZX9 223 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 FZD3Q9NPG1 666 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 STOML1Q9UBI4 398 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 ADAM29Q9UKF5 820 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 POMPQ9Y244 141 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 KCNK6Q9Y257 313 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 MAN2B2Q9Y2E5 1009 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 PRKAB1Q9Y478 270 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 PCYT1BQ9Y5K3 369 aaPredicted RBP12.67□□□□□ -0.38
SLIRP-201ENST00000238688 CACNA1GO43497 2377 aa12.67□□□□□ -0.38
SLIRP-201ENST00000238688 COL27A1Q8IZC6 1860 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 A6NCN8 305 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 BCAS2O75934 225 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 XRCC1P18887 633 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 HNRNPH1P31943 449 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 ZFP36L2P47974 494 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 CLDN6P56747 220 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 CLDN2P57739 230 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 EEFSECP57772 596 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 UFM1P61960 85 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 REEP5Q00765 189 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 HMGCS1Q01581 520 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 TRIM25Q14258 630 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 SLBPQ14493 270 aaKnown RBP eCLIP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 KIR2DS3Q14952 304 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 KPNB1Q14974 876 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 TLR1Q15399 786 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 ALG11Q2TAA5 492 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 ICE2Q659A1 982 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 SCIMPQ6UWF3 145 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 DHRS13Q6UX07 377 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 RIPOR1Q6ZS17 1223 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 PAGE2Q7Z2X7 111 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 R3HCC1LQ7Z5L2 792 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 PARGQ86W56 976 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 PROSER1Q86XN7 944 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 HID1Q8IV36 788 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 SLC22A18ASQ8N1D0 253 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 SLC25A45Q8N413 288 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 LIX1Q8N485 282 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 OR13H1Q8NG92 308 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 OR8J3Q8NGG0 315 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 HUS1BQ8NHY5 278 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 CHTF18Q8WVB6 975 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 SLC13A3Q8WWT9 602 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 KLHDC7BQ96G42 594 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 PDXPQ96GD0 296 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 CNDP2Q96KP4 475 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 NPAS2Q99743 824 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 ACTL8Q9H568 366 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 DMRT3Q9NQL9 472 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 FARSBQ9NSD9 589 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 IMP3Q9NV31 184 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 TMEM184CQ9NVA4 438 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 FAM120CQ9NX05 1096 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 FTSJ1Q9UET6 329 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 MOSPD1Q9UJG1 213 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 PSMD13Q9UNM6 376 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 TDRKHQ9Y2W6 561 aaKnown RBP12.66□□□□□ -0.38
SLIRP-201ENST00000238688 ENTPD2Q9Y5L3 495 aa12.66□□□□□ -0.38
SLIRP-201ENST00000238688 TRBC2A0A5B9 178 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms