RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TMEM221A6NGB7 291 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 RNASET2O00584 256 aaKnown RBP18.02■□□□□ 0.48
CPSF3-201ENST00000238112 TSPAN6O43657 245 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 PCDH7O60245 1069 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 RFPL2O75678 378 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 OPN1SWP03999 348 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 TIA1P31483 386 aaKnown RBP eCLIP18.02■□□□□ 0.482e-7■■■■□ 25.8
CPSF3-201ENST00000238112 LIPAP38571 399 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 ETV3P41162 512 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 MAGEA8P43361 318 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 PREPP48147 710 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 DCDC1P59894 354 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 TUBA1BP68363 451 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 PPIGQ13427 754 aaKnown RBP eCLIP18.02■□□□□ 0.48
CPSF3-201ENST00000238112 MAPK11Q15759 364 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 TBCEQ15813 527 aaPredicted RBP18.02■□□□□ 0.48
CPSF3-201ENST00000238112 CCSMST1Q4G0I0 132 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 TUBA1AQ71U36 451 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 OR10G2Q8NGC3 310 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 CHTF18Q8WVB6 975 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 PROX1Q92786 737 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 FOXJ1Q92949 421 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 ZBTB20Q9HC78 741 aaPredicted RBP18.02■□□□□ 0.48
CPSF3-201ENST00000238112 INIPQ9NRY2 104 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 PSORS1C1Q9UIG5 152 aa18.02■□□□□ 0.48
CPSF3-201ENST00000238112 SLC16A8O95907 504 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 LRG1P02750 347 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 C21orf33P30042 268 aaPredicted RBP18.01■□□□□ 0.47
CPSF3-201ENST00000238112 PPP5CP53041 499 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 FPGSQ05932 587 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 TRAM1L1Q8N609 369 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 RHOXF1Q8NHV9 184 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 PSD2Q9BQI7 771 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 RIOK2Q9BVS4 552 aaKnown RBP18.01■□□□□ 0.47
CPSF3-201ENST00000238112 SPG21Q9NZD8 308 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 MAFFQ9ULX9 164 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 OBSL1O75147 1896 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 IMPA1P29218 277 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 RPS13P62277 151 aaKnown RBP18.01■□□□□ 0.47
CPSF3-201ENST00000238112 SPIBQ01892 262 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 TIGD6Q17RP2 521 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 ASTLQ6HA08 431 aaPredicted RBP18.01■□□□□ 0.47
CPSF3-201ENST00000238112 TMC8Q8IU68 726 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 CADM3Q8N126 398 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 SLC5A8Q8N695 610 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 OR2A12Q8NGT7 310 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 PSMA8Q8TAA3 256 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 FOPNLQ96NB1 174 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 ZSCAN5AQ9BUG6 496 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 PLCXD1Q9NUJ7 323 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 TRIM17Q9Y577 477 aa18.01■□□□□ 0.47
CPSF3-201ENST00000238112 CLCA1A8K7I4 914 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 TMEM229AB2RXF0 380 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 NEDD8-MDP1E9PL57 170 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 ATG13O75143 517 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 GCM2O75603 506 aaPredicted RBP18■□□□□ 0.47
CPSF3-201ENST00000238112 PABPC1P11940 636 aaKnown RBP18■□□□□ 0.47
CPSF3-201ENST00000238112 ANXA8P13928 327 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 TNFRSF1BP20333 461 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 PTX3P26022 381 aaPredicted RBP18■□□□□ 0.47
CPSF3-201ENST00000238112 CTSKP43235 329 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 IDH2P48735 452 aaKnown RBP18■□□□□ 0.47
CPSF3-201ENST00000238112 CASP9P55211 416 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF284Q2VY69 593 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF404Q494X3 552 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 IFI44LQ53G44 452 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 CATSPEREQ5SY80 951 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 AGAP7PQ5VUJ5 663 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 DDX53Q86TM3 631 aaKnown RBP18■□□□□ 0.47
CPSF3-201ENST00000238112 DNAJC22Q8N4W6 341 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 OR56A3Q8NH54 315 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 OR52J3Q8NH60 311 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 CXorf40BQ96DE9 158 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 PKP4Q99569 1192 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 BHLHE41Q9C0J9 482 aaPredicted RBP18■□□□□ 0.47
CPSF3-201ENST00000238112 AMBNQ9NP70 447 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 TMEM184CQ9NVA4 438 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 SPASTQ9UBP0 616 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 POFUT2Q9Y2G5 429 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 KCNE2Q9Y6J6 123 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 FADS2P1A8MWK0 482 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 KDM1AO60341 852 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 AOC2O75106 756 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 CNOT3O75175 753 aaKnown RBP18■□□□□ 0.47
CPSF3-201ENST00000238112 HLA-EP13747 358 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 ETFAP13804 333 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 CD40LGP29965 261 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 UGT2B10P36537 528 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 CDH12P55289 794 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 CD300CQ08708 224 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 PRSS36Q5K4E3 855 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 GCNT6Q5T4J0 391 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 MLIPQ5VWP3 458 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 MED27Q6P2C8 311 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 TSEN54Q7Z6J9 526 aaKnown RBP18■□□□□ 0.47
CPSF3-201ENST00000238112 TMPRSS11BQ86T26 416 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 TMEM25Q86YD3 366 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 REPS1Q96D71 796 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 MMP27Q9H306 513 aa18■□□□□ 0.47
CPSF3-201ENST00000238112 KIAA1671Q9BY89 1806 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms