RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CRTAC1Q9NQ79 661 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 PCDHGA2Q9Y5H1 932 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 SNED1Q8TER0 1413 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 OR2AT4A6NND4 320 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 AHSA1O95433 338 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 MAPK3P27361 379 aaPredicted RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 ARRB1P49407 418 aaPredicted RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 CEBPGP53567 150 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 CDKL1Q00532 357 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 ADAM15Q13444 863 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 DSG2Q14126 1118 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 CYBRD1Q53TN4 286 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 ASB18Q6ZVZ8 466 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 C12orf40Q86WS4 652 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 CHCHD4Q8N4Q1 142 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 SUN3Q8TAQ9 357 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 TUBA1CQ9BQE3 449 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 DPAGT1Q9H3H5 408 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 SLC2A4RGQ9NR83 387 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 A8MUA0 341 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 SOD2P04179 222 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ITGB1P05556 798 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 DLDP09622 509 aaKnown RBP13.13□□□□□ -0.31
SF3A1-201ENST00000215793 RING1Q06587 406 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF782Q6ZMW2 699 aaPredicted RBP13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ZC3H3Q8IXZ2 948 aaKnown RBP13.13□□□□□ -0.31
SF3A1-201ENST00000215793 SGCDQ92629 289 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 MOAP1Q96BY2 351 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 PEBP4Q96S96 227 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ASPNQ9BXN1 380 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 RNF121Q9H920 327 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ACSL5Q9ULC5 683 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 NPIPA5E9PKD4 350 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 CSTBP04080 98 aaKnown RBP13.13□□□□□ -0.31
SF3A1-201ENST00000215793 SLC6A6P31641 620 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 RFC2P35250 354 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 TRAM2Q15035 370 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 GXYLT1Q4G148 440 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 NIPAL1Q6NVV3 410 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF773Q6PK81 442 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 CHERPQ8IWX8 916 aaKnown RBP13.13□□□□□ -0.31
SF3A1-201ENST00000215793 OR4E2Q8NGC2 313 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 OR4K17Q8NGC6 315 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 OR2L8Q8NGY9 312 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 OSTF1Q92882 214 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ADAM7Q9H2U9 754 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ACTL8Q9H568 366 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 MKS1Q9NXB0 559 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 NPIPA1Q9UND3 350 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 KCNK6Q9Y257 313 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 KANTRA0A1W2PQU2 76 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ABCB7O75027 752 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 IFNA7P01567 189 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 F7P08709 466 aaPredicted RBP13.13□□□□□ -0.31
SF3A1-201ENST00000215793 GDI2P50395 445 aaKnown RBP13.13□□□□□ -0.31
SF3A1-201ENST00000215793 CREB5Q02930 508 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 LASP1Q14847 261 aaKnown RBP13.13□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF404Q494X3 552 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 C6orf136Q5SQH8 315 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 PAQR7Q86WK9 346 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 NPLOC4Q8TAT6 608 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 C7orf43Q8WVR3 580 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 TRPV4Q9HBA0 871 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 CPED1A4D0V7 1026 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 HOXB2P14652 356 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 HOXD13P35453 343 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 MEDAGQ5VYS4 303 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 SLC9B2Q86UD5 537 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 PDSS2Q86YH6 399 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 PNPLA2Q96AD5 504 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 TMEM80Q96HE8 168 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 SHDQ96IW2 340 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 TM9SF2Q99805 663 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 TXNRD2Q9NNW7 524 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 PSAT1Q9Y617 370 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 MAU2Q9Y6X3 613 aa13.13□□□□□ -0.31
SF3A1-201ENST00000215793 H3BSA7 217 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 CAPN5O15484 640 aaPredicted RBP13.12□□□□□ -0.31
SF3A1-201ENST00000215793 TYROBPO43914 113 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 AOC2O75106 756 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 RPP14O95059 124 aaKnown RBP13.12□□□□□ -0.31
SF3A1-201ENST00000215793 C6orf47O95873 294 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 CHRNA1P02708 482 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 KLK3P07288 261 aaPredicted RBP13.12□□□□□ -0.31
SF3A1-201ENST00000215793 MATN1P21941 496 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF792Q3KQV3 632 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 TMEM156Q8N614 296 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 RHEBL1Q8TAI7 183 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 POF1BQ8WVV4 589 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 IRF7Q92985 503 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 REEP4Q9H6H4 257 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 B3GAT2Q9NPZ5 323 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 TLR9Q9NR96 1032 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 CLDND1Q9NY35 253 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 PDE4DIPQ5VU43 2346 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 J3QLW9 94 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 CFIP05156 583 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 YES1P07947 543 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 PFKMP08237 780 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 EPCAMP16422 314 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms