RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	OR51B5	Q9H339	312 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	SEMA6C	Q9H3T2	930 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	EPB41L1	Q9H4G0	881 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	C11orf16	Q9NQ32	467 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	FSCN3	Q9NQT6	498 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	POMT2	Q9UKY4	750 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	PADI4	Q9UM07	663 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	KLHL20	Q9Y2M5	609 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	RNF215	Q9Y6U7	377 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	RP1	P56715	2156 aa		11.27	□□□□□ -0.61
CLN6-223	ENST00000637823	ZNF318	Q5VUA4	2279 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	ASXL3	Q9C0F0	2248 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	DYTN	A2CJ06	578 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	ANKRD28	O15084	1053 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	DNAJC8	O75937	253 aa	Predicted RBP	11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	SEMA3D	O95025	777 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	PNLIP	P16233	465 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	MAG	P20916	626 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	JAK1	P23458	1154 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	MPL	P40238	635 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	BCL6	P41182	706 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	CAPZB	P47756	277 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	POLR2J	P52435	117 aa	Known RBP	11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	CLDN8	P56748	225 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	ACTN3	Q08043	901 aa	Predicted RBP	11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	NR1D2	Q14995	579 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	LPAL2	Q16609	132 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	TMEM35A	Q53FP2	167 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	FCRL6	Q6DN72	434 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	RINL	Q6ZS11	566 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	GK5	Q6ZS86	529 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	ASRGL1	Q7L266	308 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	TRIM73	Q86UV7	250 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	GATAD2A	Q86YP4	633 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	C1orf52	Q8N6N3	182 aa	Known RBP	11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	FAM181A	Q8N9Y4	354 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	GLB1L3	Q8NCI6	653 aa	Predicted RBP	11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	BAHD1	Q8TBE0	780 aa	Predicted RBP	11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	PROKR1	Q8TCW9	393 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	RSC1A1	Q92681	617 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	RGMA	Q96B86	450 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	KLHL29	Q96CT2	875 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	ZBTB18	Q99592	522 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	CENPK	Q9BS16	269 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	MRPL1	Q9BYD6	325 aa	Known RBP	11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	DPY30	Q9C005	99 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	ABCG4	Q9H172	646 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	C1orf21	Q9H246	121 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	LRMDA	Q9H2I8	198 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	ARRDC1-AS1	Q9H2J1	176 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	EFCAB1	Q9HAE3	211 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	IL21R	Q9HBE5	538 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	TAS2R1	Q9NYW7	299 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	EPHA6	Q9UF33	1036 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	BAIAP2L1	Q9UHR4	511 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	MAPRE3	Q9UPY8	281 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	DLGAP4	Q9Y2H0	992 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	PCDHGA4	Q9Y5G9	962 aa		11.26	□□□□□ -0.61
CLN6-223	ENST00000637823	SCN3A	Q9NY46	2000 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	BBIP1	A8MTZ0	92 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	TRIM38	O00635	465 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	KHNYN	O15037	678 aa	Known RBP	11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	GYG2	O15488	501 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	PCDHGA12	O60330	932 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	PRMT3	O60678	531 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	SH3BGRL	O75368	114 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	TBX6	O95947	436 aa	Predicted RBP	11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	ANXA4	P09525	319 aa	Predicted RBP	11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	CD1E	P15812	388 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	SDC1	P18827	310 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	CDH3	P22223	829 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	ALDH4A1	P30038	563 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	TIA1	P31483	386 aa	Known RBP eCLIP	11.25	□□□□□ -0.61	1e-5	■■■□□ 19.1
CLN6-223	ENST00000637823	ASMT	P46597	345 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	ZFP36L2	P47974	494 aa	Known RBP	11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	CPA2	P48052	419 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	LSS	P48449	732 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	RAP1GDS1	P52306	607 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	ARFIP1	P53367	373 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	CLNS1A	P54105	237 aa	Known RBP	11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	KCNK10	P57789	538 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	OR1D5	P58170	312 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	CYP4F2	P78329	520 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	RAE1	P78406	368 aa	Known RBP	11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	MXRA7	P84157	204 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	NR0B2	Q15466	257 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	PAGE2	Q7Z2X7	111 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	COMMD6	Q7Z4G1	85 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	OR9I1	Q8NGQ6	314 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	TM4SF19	Q96DZ7	209 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	ZDHHC12	Q96GR4	267 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	AHCYL2	Q96HN2	611 aa	Known RBP	11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	TEX37	Q96LM6	180 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	QRFPR	Q96P65	431 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	F2RL3	Q96RI0	385 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	CD180	Q99467	661 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	ACTL8	Q9H568	366 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	C1GALT1	Q9NS00	363 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms