RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SUSD1Q6UWL2 747 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 PLD3Q8IV08 490 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 KRT222Q8N1A0 295 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 RELL2Q8NC24 303 aaPredicted RBP13.58□□□□□ -0.24
CLN3-249ENST00000636685 PLPP5Q8NEB5 264 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 CREB3L4Q8TEY5 395 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 STYXQ8WUJ0 223 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 CTNNBL1Q8WYA6 563 aaPredicted RBP13.58□□□□□ -0.24
CLN3-249ENST00000636685 SH3GL2Q99962 352 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 DEPPQ9NTK1 212 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 DDX56Q9NY93 547 aaKnown RBP13.58□□□□□ -0.24
CLN3-249ENST00000636685 HYOU1Q9Y4L1 999 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 H7C0C1 242 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 BCKDKO14874 412 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 CRLF1O75462 422 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 NSA2O95478 260 aaKnown RBP13.57□□□□□ -0.24
CLN3-249ENST00000636685 EPXP11678 715 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 IL1RNP18510 177 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 ATP5OP48047 213 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 CBLBQ13191 982 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 TSTA3Q13630 321 aaPredicted RBP13.57□□□□□ -0.24
CLN3-249ENST00000636685 ANKRD20A2Q5SQ80 823 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 C1orf185Q5T7R7 199 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 ANKRD20A1Q5TYW2 823 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 LRRC38Q5VT99 294 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 ANKRD20A3Q5VUR7 823 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 ZNF425Q6IV72 752 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 CYP4Z2PQ8N1L4 340 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 SKA2Q8WVK7 121 aaPredicted RBP13.57□□□□□ -0.24
CLN3-249ENST00000636685 RNASE6Q93091 150 aaKnown RBP13.57□□□□□ -0.24
CLN3-249ENST00000636685 BDH2Q9BUT1 245 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 CARD6Q9BX69 1037 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 PIH1D1Q9NWS0 290 aaKnown RBP13.57□□□□□ -0.24
CLN3-249ENST00000636685 B4GALT7Q9UBV7 327 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 FEZ2Q9UHY8 353 aaPredicted RBP13.57□□□□□ -0.24
CLN3-249ENST00000636685 R3HDM2Q9Y2K5 976 aaKnown RBP13.57□□□□□ -0.24
CLN3-249ENST00000636685 DUSP10Q9Y6W6 482 aa13.57□□□□□ -0.24
CLN3-249ENST00000636685 A0A1W2PPR1 153 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 F8W8V4 182 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 FCHO1O14526 889 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 HAT1O14929 419 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 PKMP14618 531 aaKnown RBP13.56□□□□□ -0.24
CLN3-249ENST00000636685 RPA3P35244 121 aaPredicted RBP13.56□□□□□ -0.24
CLN3-249ENST00000636685 BCL6P41182 706 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 PLGLB1Q02325 96 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 POU4F3Q15319 338 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 TYSND1Q2T9J0 566 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 LINC01560Q8TB33 94 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 MCOLN3Q8TDD5 553 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 SYN2Q92777 582 aaPredicted RBP13.56□□□□□ -0.24
CLN3-249ENST00000636685 ALS2CR12Q96Q35 445 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 MACROD1Q9BQ69 325 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 CNPPD1Q9BV87 410 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 ZDHHC11Q9H8X9 412 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 LANCL2Q9NS86 450 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 ALKBH4Q9NXW9 302 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 SPATA7Q9P0W8 599 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 KIAA1549Q9HCM3 1950 aa13.56□□□□□ -0.24
CLN3-249ENST00000636685 FEZF1A0PJY2 475 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 OR14I1A6ND48 311 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 CLCA1A8K7I4 914 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 MAGEB17A8MXT2 336 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 RDH16O75452 317 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 EZRP15311 586 aaKnown RBP13.55□□□□□ -0.24
CLN3-249ENST00000636685 ASCL1P50553 236 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 TMED2Q15363 201 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 RIPPLY2Q5TAB7 128 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 HMBOX1Q6NT76 420 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 ADCK2Q7Z695 626 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 PCGF5Q86SE9 256 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 CYP4X1Q8N118 509 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 SLC35G2Q8TBE7 412 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 ZNF592Q92610 1267 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 PEX11GQ96HA9 241 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 CCDC138Q96M89 665 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 NAP1L5Q96NT1 182 aaPredicted RBP13.55□□□□□ -0.24
CLN3-249ENST00000636685 TSSK1BQ9BXA7 367 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 ANO10Q9NW15 660 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 TAC3Q9UHF0 121 aa13.55□□□□□ -0.24
CLN3-249ENST00000636685 TSR3Q9UJK0 312 aaKnown RBP13.55□□□□□ -0.24
CLN3-249ENST00000636685 hCG_1818297A0A087WSY0 165 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 A0A0G2JMM0 328 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 A0A1W2PPB8 328 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 A0A1W2PRS3 328 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 MROH6A6NGR9 719 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 TUBAL3A6NHL2 446 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 KIR3DP1A8MWS1 328 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 SMPD2O60906 423 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 WDR1O75083 606 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 BMP5P22003 454 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 PSMA3P25788 255 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 MPP1Q00013 466 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 PRDX1Q06830 199 aaKnown RBP13.54□□□□□ -0.24
CLN3-249ENST00000636685 SEMA3AQ14563 771 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 FILIP1LQ4L180 1135 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 CCDC38Q502W7 563 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 ICE2Q659A1 982 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 CAPN12Q6ZSI9 719 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 TRILQ7L0X0 811 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 VN1R4Q7Z5H5 301 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms