RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SGPP1Q9BX95 441 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 STMN3Q9NZ72 180 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 PDE10AQ9Y233 779 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 SLC22A7Q9Y694 548 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 GTF3C1Q12789 2109 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 USP27XA6NNY8 438 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 CELA2AP08217 269 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 XCR1P46094 333 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 SKP1P63208 163 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 CRYMQ14894 314 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 EXT1Q16394 746 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 MINDY4Q4G0A6 757 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 MTFR2Q6P444 385 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 AGTRAPQ6RW13 159 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 ASPGQ86U10 573 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 CNTN4Q8IWV2 1026 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 MS4A14Q96JA4 679 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 OR1F2PQ96R84 312 aa17.4■□□□□ 0.38
CLN3-241ENST00000635861 IARS2Q9NSE4 1012 aaKnown RBP17.4■□□□□ 0.38
CLN3-241ENST00000635861 CORO1CQ9ULV4 474 aaPredicted RBP17.4■□□□□ 0.38
CLN3-241ENST00000635861 NCOA6Q14686 2063 aaPredicted RBP17.4■□□□□ 0.38
CLN3-241ENST00000635861 PABPN1LA6NDY0 278 aaKnown RBP17.39■□□□□ 0.38
CLN3-241ENST00000635861 CES2O00748 559 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 HNRNPRO43390 633 aaKnown RBP17.39■□□□□ 0.38
CLN3-241ENST00000635861 ZG16O60844 167 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 EFNA3P52797 238 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 AP1S2P56377 157 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 ZNF33BQ06732 778 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 KCTD19Q17RG1 926 aaPredicted RBP17.39■□□□□ 0.38
CLN3-241ENST00000635861 SPANXN3Q5MJ09 141 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 RNASEH2BQ5TBB1 312 aaKnown RBP17.39■□□□□ 0.38
CLN3-241ENST00000635861 MFSD4BQ5TF39 518 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 CAPN13Q6MZZ7 669 aaPredicted RBP17.39■□□□□ 0.38
CLN3-241ENST00000635861 GFRALQ6UXV0 394 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 FJX1Q86VR8 437 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 M1APQ8TC57 530 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 EEF1AKMT1Q8WVE0 214 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 SLC13A3Q8WWT9 602 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 RUBCNLQ9H714 662 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 TRMT1Q9NXH9 659 aaKnown RBP17.39■□□□□ 0.38
CLN3-241ENST00000635861 SUCOQ9UBS9 1254 aaKnown RBP17.39■□□□□ 0.38
CLN3-241ENST00000635861 ADAMTS6Q9UKP5 1117 aa17.39■□□□□ 0.38
CLN3-241ENST00000635861 F7P08709 466 aaPredicted RBP17.38■□□□□ 0.37
CLN3-241ENST00000635861 IL1RNP18510 177 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 TIAL1Q01085 375 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLN3-241ENST00000635861 RBPJQ06330 500 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 DHX9Q08211 1270 aaKnown RBP17.38■□□□□ 0.37
CLN3-241ENST00000635861 HERC3Q15034 1050 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 BTBD16Q32M84 506 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 C1QL3Q5VWW1 255 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 DUPD1Q68J44 220 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 TBC1D19Q8N5T2 526 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 MFSD9Q8NBP5 474 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 PLPP5Q8NEB5 264 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 ABHD11Q8NFV4 315 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 ATL1Q8WXF7 558 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 DNALI1O14645 258 aaPredicted RBP17.38■□□□□ 0.37
CLN3-241ENST00000635861 SEC24DO94855 1032 aaPredicted RBP17.38■□□□□ 0.37
CLN3-241ENST00000635861 MLYCDO95822 493 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 ART3Q13508 389 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 NAE1Q13564 534 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 PWP1Q13610 501 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 PPP1R7Q15435 360 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 MEP1AQ16819 746 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 PAQR3Q6TCH7 311 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 TMEM207Q6UWW9 146 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 LANCL3Q6ZV70 420 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 PRSS41Q7RTY9 318 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 ANKRD37Q7Z713 158 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 STRA8Q7Z7C7 330 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 SLC26A11Q86WA9 606 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 LGI4Q8N135 537 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 OR4K1Q8NGD4 311 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 NDNQ99608 321 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 TRIM54Q9BYV2 358 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 ATG10Q9H0Y0 220 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 MMP25Q9NPA2 562 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 HCN3Q9P1Z3 774 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 COPG2Q9UBF2 871 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 SEC14L3Q9UDX4 400 aa17.38■□□□□ 0.37
CLN3-241ENST00000635861 KLF2Q9Y5W3 355 aaPredicted RBP17.38■□□□□ 0.37
CLN3-241ENST00000635861 SGK494L7N484 410 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 ENO2P09104 434 aaPredicted RBP17.37■□□□□ 0.37
CLN3-241ENST00000635861 NPPBP16860 134 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 CCR8P51685 355 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 KCNK10P57789 538 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 IL2P60568 153 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 ZNF766Q5HY98 468 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 ACER2Q5QJU3 275 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 C17orf53Q8N3J3 647 aaPredicted RBP17.37■□□□□ 0.37
CLN3-241ENST00000635861 AFAP1L2Q8N4X5 818 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 KCT2Q8NC54 265 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 OR56A3Q8NH54 315 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 SLCO2A1Q92959 643 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 LINGO1Q96FE5 620 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 OSBPL9Q96SU4 736 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 LPAR4Q99677 370 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 CLK4Q9HAZ1 481 aaKnown RBP17.37■□□□□ 0.37
CLN3-241ENST00000635861 KCNK13Q9HB14 408 aa17.37■□□□□ 0.37
CLN3-241ENST00000635861 TRBC2A0A5B9 178 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms