RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 GIN1Q9NXP7 522 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 PCDHGA6Q9Y5G7 932 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 PMF1-BGLAPU3KQ54 211 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 CLDN24A6NM45 220 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 FADS2P1A8MWK0 482 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 GCM2O75603 506 aaPredicted RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 LRG1P02750 347 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 CATP04040 527 aaKnown RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 ANXA4P09525 319 aaPredicted RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 GJA1P17302 382 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 PSMB9P28065 219 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 TGFBR2P37173 567 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 MAPK9P45984 424 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 SERPINB10P48595 397 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 PNLIPRP1P54315 467 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 DDX39BQ13838 428 aaKnown RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 TEAD4Q15561 434 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 LILRA6Q6PI73 481 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 BTLAQ7Z6A9 289 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 RAVER1Q8IY67 606 aaKnown RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 ENTHD1Q8IYW4 607 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 MINDY2Q8NBR6 621 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 OR7G3Q8NG95 312 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 OR6Q1Q8NGQ2 317 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 GOT1L1Q8NHS2 421 aaPredicted RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 BTN2A2Q8WVV5 523 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 VPS35Q96QK1 796 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 MYOCQ99972 504 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 HEPHQ9BQS7 1158 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 NEURL2Q9BR09 285 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 RIOK2Q9BVS4 552 aaKnown RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 PLCXD1Q9NUJ7 323 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 ZNF282Q9UDV7 671 aaPredicted RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 ATP6V1HQ9UI12 483 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 OR2AG2A6NM03 316 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 TSPAN6O43657 245 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 NADKO95544 446 aaPredicted RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 FADS2O95864 444 aaKnown RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 TIMP2P16035 220 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 IMPA1P29218 277 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 TIA1P31483 386 aaKnown RBP eCLIP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 ETV3P41162 512 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 PRLHRP49683 370 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 ELOAQ14241 798 aaKnown RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 SF1Q15637 639 aaKnown RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 TECPR1Q7Z6L1 1165 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 ADIPOR2Q86V24 386 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 C11orf65Q8NCR3 313 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 CDC26Q8NHZ8 85 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 FCGR1BQ92637 280 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 TPD52L3Q96J77 140 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 PKP4Q99569 1192 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 ALOXE3Q9BYJ1 711 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 VPS4AQ9UN37 437 aa12.3□□□□□ -0.44
LINC00540-203ENST00000631321 EXO1Q9UQ84 846 aaKnown RBP12.3□□□□□ -0.44
LINC00540-203ENST00000631321 SERPINB7O75635 380 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CDH3P22223 829 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 MVDP53602 400 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CTSCP53634 463 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 VBP1P61758 197 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CCSMST1Q4G0I0 132 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 SYTL3Q4VX76 610 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ZNF648Q5T619 568 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CCDC81Q6ZN84 652 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 SLCO4C1Q6ZQN7 724 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 NAGSQ8N159 534 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ZNF557Q8N988 423 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 RASGEF1AQ8N9B8 481 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 HUS1BQ8NHY5 278 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 UBE2FQ969M7 185 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 TMEM159Q96B96 161 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 MED8Q96G25 268 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 BHLHE41Q9C0J9 482 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ZBP1Q9H171 429 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ANKHQ9HCJ1 492 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 SELENONQ9NZV5 590 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CCL26Q9Y258 94 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 LYVE1Q9Y5Y7 322 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 DENND4CQ5VZ89 1909 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ATG13O75143 517 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 TNFRSF21O75509 655 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 SLC16A8O95907 504 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 GGT2P36268 569 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 RECQLP46063 649 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 BDKRB1P46663 353 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CCR3P51677 355 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 SELENOWP63302 87 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CYP2A13Q16696 494 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 HIST2H2ACQ16777 129 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 TRIM16LQ309B1 348 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ZNF658BQ4V348 819 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 C10orf62Q5T681 223 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ADNP2Q6IQ32 1131 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CCDC149Q6ZUS6 474 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 TMCO2Q7Z6W1 182 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 KIAA0907Q7Z7F0 614 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ZBTB8BQ8NAP8 495 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 FBXO15Q8NCQ5 510 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 OR4C15Q8NGM1 316 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms