RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 C9J4A7 227 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 DSCR3O14972 297 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 P2RX6O15547 441 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 NDUFS4O43181 175 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 CTIFO43310 598 aaKnown RBP17.24■□□□□ 0.35
CLN3-239ENST00000628023 KATNA1O75449 491 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 SIX3O95343 332 aaPredicted RBP17.24■□□□□ 0.35
CLN3-239ENST00000628023 SLC35G6P0C7Q6 338 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 FAM87AP0C7U9 286 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 CRHR1P34998 444 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 RORAP35398 523 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 DLSTP36957 453 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 CYP4F2P78329 520 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 IRF8Q02556 426 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 CHIT1Q13231 466 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 GTF2H2Q13888 395 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 PCBP2Q15366 365 aaKnown RBP eCLIP17.24■□□□□ 0.35
CLN3-239ENST00000628023 MUM1Q2TAK8 710 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 CCDC153Q494R4 210 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 PAGE2BQ5JRK9 111 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 BEND6Q5SZJ8 279 aaPredicted RBP17.24■□□□□ 0.35
CLN3-239ENST00000628023 GTF2H2CQ6P1K8 395 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 TRABD2AQ86V40 505 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 MYLK4Q86YV6 388 aaPredicted RBP17.24■□□□□ 0.35
CLN3-239ENST00000628023 CAMKVQ8NCB2 501 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 ZNF740Q8NDX6 193 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 MYRIPQ8NFW9 859 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 CT55Q8WUE5 264 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 SLC13A3Q8WWT9 602 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 ZBTB9Q96C00 473 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 PTCD3Q96EY7 689 aaKnown RBP17.24■□□□□ 0.35
CLN3-239ENST00000628023 APOPT1Q96IL0 206 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 DPH2Q9BQC3 489 aaPredicted RBP17.24■□□□□ 0.35
CLN3-239ENST00000628023 EFHD1Q9BUP0 239 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 EFCAB11Q9BUY7 163 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 SYNPO2LQ9H987 977 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 GRID1Q9ULK0 1009 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 MDC1Q14676 2089 aaKnown RBP17.24■□□□□ 0.35
CLN3-239ENST00000628023 TENM4Q6N022 2769 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 LOC101059948A0A1B0GTJ6 334 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 A8MT66 165 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 LCMT2O60294 686 aaKnown RBP17.23■□□□□ 0.35
CLN3-239ENST00000628023 LIFP15018 202 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 TCN2P20062 427 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 ATP5F1P24539 256 aaPredicted RBP17.23■□□□□ 0.35
CLN3-239ENST00000628023 SCTRP47872 440 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 SLC18A2Q05940 514 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 RGS1Q08116 209 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 DOC2AQ14183 400 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 SLC9A5Q14940 896 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 HIST2H2ACQ16777 129 aaPredicted RBP17.23■□□□□ 0.35
CLN3-239ENST00000628023 NDUFA9Q16795 377 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 PRTGQ2VWP7 1150 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 HIST2H2AA3Q6FI13 130 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 METTL2BQ6P1Q9 378 aaKnown RBP17.23■□□□□ 0.35
CLN3-239ENST00000628023 FAM199XQ6PEV8 388 aaPredicted RBP17.23■□□□□ 0.35
CLN3-239ENST00000628023 LRIG3Q6UXM1 1119 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 SH2D5Q6ZV89 423 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 GOLGA7Q7Z5G4 137 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 VN1R4Q7Z5H5 301 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 METTL27Q8N6F8 245 aaPredicted RBP17.23■□□□□ 0.35
CLN3-239ENST00000628023 CCT6BQ92526 530 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 ATP6V1E2Q96A05 226 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 CHST8Q9H2A9 424 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 EHD1Q9H4M9 534 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 ACTR8Q9H981 624 aa17.23■□□□□ 0.35
CLN3-239ENST00000628023 GEMIN8Q9NWZ8 242 aaKnown RBP17.23■□□□□ 0.35
CLN3-239ENST00000628023 GPN3Q9UHW5 284 aaPredicted RBP17.23■□□□□ 0.35
CLN3-239ENST00000628023 E2F3O00716 465 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 WISP1O95388 367 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 SBK3P0C264 359 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 MYZAPP0CAP1 466 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 MYL2P10916 166 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 AHRP35869 848 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 RPS15P62841 145 aaKnown RBP17.22■□□□□ 0.35
CLN3-239ENST00000628023 DCDP81605 110 aaKnown RBP17.22■□□□□ 0.35
CLN3-239ENST00000628023 NFKB2Q00653 900 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 LAPTM5Q13571 262 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 DNASE1L3Q13609 305 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 RBBP7Q16576 425 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 GARNL3Q5VVW2 1013 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 BORAQ6PGQ7 559 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 TMIGD1Q6UXZ0 262 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 ATG14Q6ZNE5 492 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 SLC22A9Q8IVM8 553 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLN3-239ENST00000628023 IQCKQ8N0W5 287 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 TTLQ8NG68 377 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 ZCCHC10Q8TBK6 192 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 PPP4R1Q8TF05 950 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 C10orf90Q96M02 699 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 GBP5Q96PP8 586 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 MACROD1Q9BQ69 325 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 C17orf62Q9BQA9 187 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 SARGQ9BW04 601 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 ADNPQ9H2P0 1102 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 AKIRIN1Q9H9L7 192 aaPredicted RBP17.22■□□□□ 0.35
CLN3-239ENST00000628023 ENAMQ9NRM1 1142 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 SENP1Q9P0U3 644 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 IFT80Q9P2H3 777 aaPredicted RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms