RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	OR7A17	O14581	309 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	KDM1A	O60341	852 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PRSS23	O95084	383 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CSF2	P04141	144 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CAPN1	P07384	714 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	MTHFD1	P11586	935 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	JUND	P17535	347 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CDH2	P19022	906 aa	Predicted RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	NDUFS1	P28331	727 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	HNRNPF	P52597	415 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	C21orf59	P57076	290 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	MERTK	Q12866	999 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	TRAF3	Q13114	568 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CAPRIN1	Q14444	709 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PAGE3	Q5JUK9	113 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	LYSMD4	Q5XG99	296 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CAPN13	Q6MZZ7	669 aa	Predicted RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	DLEU7	Q6UYE1	221 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	MILR1	Q7Z6M3	343 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	THOC6	Q86W42	341 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	NRROS	Q86YC3	692 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	EPHX4	Q8IUS5	362 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	KLHDC8A	Q8IYD2	350 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	SFRP1	Q8N474	314 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CBR4	Q8N4T8	237 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	TRIML2	Q8N7C3	387 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	OR52B6	Q8NGF0	335 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	MED8	Q96G25	268 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	TEX37	Q96LM6	180 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	RDH12	Q96NR8	316 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	ADI1	Q9BV57	179 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	GRIP2	Q9C0E4	1043 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	TCEAL2	Q9H3H9	227 aa	Predicted RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	IL1RL2	Q9HB29	575 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	GIMAP2	Q9UG22	337 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	APOBEC3B	Q9UH17	382 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	AURKC	Q9UQB9	309 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CCL27	Q9Y4X3	112 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	AK5	Q9Y6K8	562 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	GON4L	Q3T8J9	2241 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PLXND1	Q9Y4D7	1925 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341		A0A0C4DFX4	3053 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	EME2	A4GXA9	379 aa	Predicted RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	DLGAP1	O14490	977 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	ACOX3	O15254	700 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	RGS14	O43566	566 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	LDLR	P01130	860 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	EBLN1	P0CF75	366 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CDH1	P12830	882 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	F3	P13726	295 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	ACPP	P15309	386 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	NME1	P15531	152 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CKMT2	P17540	419 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	ITPKA	P23677	461 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	VARS	P26640	1264 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	DHPS	P49366	369 aa	Predicted RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PNLIPRP1	P54315	467 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	NXPH1	P58417	271 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PWP1	Q13610	501 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	GK3P	Q14409	553 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	TCEA2	Q15560	299 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	TEAD4	Q15561	434 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	AP1AR	Q63HQ0	302 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PMS2CL	Q68D20	193 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	DUS1L	Q6P1R4	473 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CYP20A1	Q6UW02	462 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	IL27RA	Q6UWB1	636 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	TAF8	Q7Z7C8	310 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	OR4F6	Q8NGB9	312 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	DNAJB14	Q8TBM8	379 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PNPT1	Q8TCS8	783 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	GFM2	Q969S9	779 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	VPS33A	Q96AX1	596 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	MAGEB10	Q96LZ2	347 aa	Predicted RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CAMK1G	Q96NX5	476 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	ZBTB18	Q99592	522 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	CGREF1	Q99674	301 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	GORASP2	Q9H8Y8	452 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	INTS7	Q9NVH2	962 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	SCHIP1	Q9P0W5	487 aa	Predicted RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	SPATA7	Q9P0W8	599 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	EGFL7	Q9UHF1	273 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PCDHGB4	Q9UN71	923 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	EIF3L	Q9Y262	564 aa	Known RBP	11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PCDHGB5	Q9Y5G0	923 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	RNF103-CHMP3	A0A140T963	221 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341		A6NCN8	305 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	NPIPB8	E9PQR5	432 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	DEAF1	O75398	565 aa	Predicted RBP	11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	IL6	P05231	212 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	ERG	P11308	486 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	ATP6V1B1	P15313	513 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	GNS	P15586	552 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	IL1RN	P18510	177 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	IL12A	P29459	219 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	HMOX2	P30519	316 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	CNR2	P34972	360 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	CSNK1E	P49674	416 aa	Known RBP	11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	CDK9	P50750	372 aa	Known RBP	11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms