RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SLC36A3Q495N2 470 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 TMEM259Q4ZIN3 620 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 PAGE2BQ5JRK9 111 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 ZCCHC8Q6NZY4 707 aaKnown RBP13.9□□□□□ -0.18
VRK3-217ENST00000599538 FAM180BQ6P0A1 224 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 LCTLQ6UWM7 567 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 TMIGD1Q6UXZ0 262 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 PTOV1Q86YD1 416 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 ANKRD53Q8N9V6 530 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 TNIP2Q8NFZ5 429 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 SETD7Q8WTS6 366 aaKnown RBP13.9□□□□□ -0.18
VRK3-217ENST00000599538 COQ8BQ96D53 544 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 REPS1Q96D71 796 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 INSM2Q96T92 566 aaPredicted RBP13.9□□□□□ -0.18
VRK3-217ENST00000599538 UGT2B28Q9BY64 529 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 SLC17A9Q9BYT1 436 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 AASDHPPTQ9NRN7 309 aa13.9□□□□□ -0.18
VRK3-217ENST00000599538 FEZF1A0PJY2 475 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 SLC31A1O15431 190 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 PLRG1O43660 514 aaKnown RBP13.89□□□□□ -0.19
VRK3-217ENST00000599538 RNGTTO60942 597 aaKnown RBP13.89□□□□□ -0.19
VRK3-217ENST00000599538 KLK1P06870 262 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 RETP07949 1114 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 ABCB1P08183 1280 aaPredicted RBP13.89□□□□□ -0.19
VRK3-217ENST00000599538 GPX2P18283 190 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 ASMTP46597 345 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 ADPRHP54922 357 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 CASP9P55211 416 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 RPS21P63220 83 aaKnown RBP13.89□□□□□ -0.19
VRK3-217ENST00000599538 ZNF763Q0D2J5 394 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 HTR4Q13639 388 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 RBBP5Q15291 538 aaKnown RBP13.89□□□□□ -0.19
VRK3-217ENST00000599538 TCEA2Q15560 299 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 HIST2H2ACQ16777 129 aaPredicted RBP13.89□□□□□ -0.19
VRK3-217ENST00000599538 CYBRD1Q53TN4 286 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 HIST2H2AA3Q6FI13 130 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 ZNF852Q6ZMS4 543 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 FAM124AQ86V42 546 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 FAM20CQ8IXL6 584 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 ZZZ3Q8IYH5 903 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 OFCC1Q8IZS5 231 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 OR52E4Q8NGH9 312 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 CYGBQ8WWM9 190 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 CIDECQ96AQ7 238 aaPredicted RBP13.89□□□□□ -0.19
VRK3-217ENST00000599538 C12orf66Q96MD2 445 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 XKR8Q9H6D3 395 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 CAAP1Q9H8G2 361 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 TPT1P8Q9HAU6 139 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 MOSPD1Q9UJG1 213 aa13.89□□□□□ -0.19
VRK3-217ENST00000599538 C1orf226A1L170 272 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 EVPLLA8MZ36 301 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 RTCAO00442 366 aaKnown RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 DEAF1O75398 565 aaPredicted RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 EPN2O95208 641 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 KLF8O95600 359 aaPredicted RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 CLPTM1O96005 669 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 CST1P01037 141 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 NTRK1P04629 796 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 SLC35G4P0C7Q5 338 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 SGCGQ13326 291 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 APOFQ13790 326 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 CLCA4Q14CN2 919 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 ZIK1Q3SY52 487 aaPredicted RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 LRRC23Q53EV4 343 aaPredicted RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 TMEM31Q5JXX7 168 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 KRT80Q6KB66 452 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 CAMKMTQ7Z624 323 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TMEM179BQ7Z7N9 219 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 SERPINA11Q86U17 422 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 C16orf78Q8WTQ4 265 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 GABRG3Q99928 467 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 SMPD3Q9NY59 655 aaPredicted RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 PCDHB11Q9Y5F2 797 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3DA0A087WVF3 549 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3IA0A087WXS9 549 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3EA0A087X179 549 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3KA0A087X1G2 549 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3FA6NER0 549 aaPredicted RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 OR52A4PA6NMU1 304 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3LB9A6J9 549 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 H7BY64 318 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3HP0C7X1 549 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 HOXB2P14652 356 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TAS2R50P59544 299 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3GQ6DHY5 549 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3CQ6IPX1 549 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 STK32CQ86UX6 486 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 C17orf64Q86WR6 236 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 PLD3Q8IV08 490 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 TBC1D3Q8IZP1 549 aaPredicted RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 METTL4Q8N3J2 472 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 SNX19Q92543 992 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 FAM131CQ96AQ9 280 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 RIPOR3Q96MK2 946 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 PRAP1Q96NZ9 151 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 FERD3LQ96RJ6 166 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 GRIP2Q9C0E4 1043 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 SMURF2Q9HAU4 748 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 LTB4R2Q9NPC1 389 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 PHPT1Q9NRX4 125 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms